miRNA display CGI


Results 21 - 40 of 92 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
8111 5' -56.8 NC_001978.2 + 35585 0.67 0.538124
Target:  5'- gCGGgUAUGCC--GUCUcCGGCGCGUu -3'
miRNA:   3'- gGCUgGUGCGGugUAGAaGCCGCGCG- -5'
8111 5' -56.8 NC_001978.2 + 31488 0.67 0.538124
Target:  5'- gCGugCACGCUuucGCGUCccggguugCGGCGCu- -3'
miRNA:   3'- gGCugGUGCGG---UGUAGaa------GCCGCGcg -5'
8111 5' -56.8 NC_001978.2 + 503 0.67 0.538124
Target:  5'- cUCGACauaGCGaaGCAUCg--GGUGCGCg -3'
miRNA:   3'- -GGCUGg--UGCggUGUAGaagCCGCGCG- -5'
8111 5' -56.8 NC_001978.2 + 32276 0.67 0.538124
Target:  5'- gCCGcucagccucaGCCguGCGCCAUccCUcagCGGUGCGCg -3'
miRNA:   3'- -GGC----------UGG--UGCGGUGuaGAa--GCCGCGCG- -5'
8111 5' -56.8 NC_001978.2 + 16476 0.67 0.531759
Target:  5'- aCCGACCACGCuUcgaagcccagcgcuuGCGgaguccaacuguUCUUCGGaacgGCGCu -3'
miRNA:   3'- -GGCUGGUGCG-G---------------UGU------------AGAAGCCg---CGCG- -5'
8111 5' -56.8 NC_001978.2 + 36078 0.67 0.527531
Target:  5'- aCgGGCCAcucaccCGCCgACAcCUg-GGCGCGCg -3'
miRNA:   3'- -GgCUGGU------GCGG-UGUaGAagCCGCGCG- -5'
8111 5' -56.8 NC_001978.2 + 18946 0.67 0.527531
Target:  5'- cUCGACC-CGgCACG-CUgagcCGGaCGCGCa -3'
miRNA:   3'- -GGCUGGuGCgGUGUaGAa---GCC-GCGCG- -5'
8111 5' -56.8 NC_001978.2 + 23515 0.67 0.517016
Target:  5'- gCUGACCGa-UCAUcUCUucgUCGGCGUGCg -3'
miRNA:   3'- -GGCUGGUgcGGUGuAGA---AGCCGCGCG- -5'
8111 5' -56.8 NC_001978.2 + 6839 0.67 0.510748
Target:  5'- gCGGCCuucacguaaucccgaAUGCCAUAca--CGGCGCGCu -3'
miRNA:   3'- gGCUGG---------------UGCGGUGUagaaGCCGCGCG- -5'
8111 5' -56.8 NC_001978.2 + 6138 0.67 0.506586
Target:  5'- aUGGCuUACGCCACGauugaagagCUUCG-CGCGCu -3'
miRNA:   3'- gGCUG-GUGCGGUGUa--------GAAGCcGCGCG- -5'
8111 5' -56.8 NC_001978.2 + 39313 0.67 0.503475
Target:  5'- gCCGACCACGaagauugaggguuaCCGCAU--UCaGCGCGa -3'
miRNA:   3'- -GGCUGGUGC--------------GGUGUAgaAGcCGCGCg -5'
8111 5' -56.8 NC_001978.2 + 1482 0.67 0.503475
Target:  5'- uUCGGCCguugGCGCCggaaGCAUCggaccguuguugugUgcgUGGCGCGCa -3'
miRNA:   3'- -GGCUGG----UGCGG----UGUAG--------------Aa--GCCGCGCG- -5'
8111 5' -56.8 NC_001978.2 + 10043 0.67 0.500372
Target:  5'- gCCGACCGuCGCCAUAg--UCGacccgaugcccucaaGCGCGg -3'
miRNA:   3'- -GGCUGGU-GCGGUGUagaAGC---------------CGCGCg -5'
8111 5' -56.8 NC_001978.2 + 5626 0.67 0.496247
Target:  5'- gCGACCgGCGCCAacgcugcCUUCGGUGagGCu -3'
miRNA:   3'- gGCUGG-UGCGGUgua----GAAGCCGCg-CG- -5'
8111 5' -56.8 NC_001978.2 + 15408 0.67 0.496247
Target:  5'- uCUGACCG----GCGUCgUUGGCGCGCg -3'
miRNA:   3'- -GGCUGGUgcggUGUAGaAGCCGCGCG- -5'
8111 5' -56.8 NC_001978.2 + 22078 0.67 0.491114
Target:  5'- aCGACCuguuugaGCGCCugAUCcggggugaguacgUCGGCcguguGCGCg -3'
miRNA:   3'- gGCUGG-------UGCGGugUAGa------------AGCCG-----CGCG- -5'
8111 5' -56.8 NC_001978.2 + 4417 0.68 0.49009
Target:  5'- aCGugUACGCCACGUUcaaccacgacacgcgUUCccuacuGGgGCGCa -3'
miRNA:   3'- gGCugGUGCGGUGUAG---------------AAG------CCgCGCG- -5'
8111 5' -56.8 NC_001978.2 + 13655 0.68 0.486005
Target:  5'- gCGACuCGCGCCuauGCGg--UCGGCGC-Cg -3'
miRNA:   3'- gGCUG-GUGCGG---UGUagaAGCCGCGcG- -5'
8111 5' -56.8 NC_001978.2 + 19365 0.68 0.483968
Target:  5'- cCCGACgGaCGCCgACGUgacgugcaagCGGUGCGCg -3'
miRNA:   3'- -GGCUGgU-GCGG-UGUAgaa-------GCCGCGCG- -5'
8111 5' -56.8 NC_001978.2 + 35427 0.68 0.475864
Target:  5'- gUGACaCAUGCCcaACAagaUCacuUUCGGCGCGUc -3'
miRNA:   3'- gGCUG-GUGCGG--UGU---AG---AAGCCGCGCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.