miRNA display CGI


Results 1 - 8 of 8 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
8112 5' -52.9 NC_001978.2 + 7331 0.65 0.782285
Target:  5'- gGACGUCUcaagaacggucgucUUCAcGcCGCCCGUG-UCAGu -3'
miRNA:   3'- -CUGCAGA--------------AGGU-CaGCGGGUACuAGUC- -5'
8112 5' -52.9 NC_001978.2 + 25512 0.66 0.753828
Target:  5'- cGACGUCguucgcCCGGUuccCGCgCAUGGUCGu -3'
miRNA:   3'- -CUGCAGaa----GGUCA---GCGgGUACUAGUc -5'
8112 5' -52.9 NC_001978.2 + 35269 0.66 0.732105
Target:  5'- -gUGUcCUUCCGG-CGCCCgAUGAUCc- -3'
miRNA:   3'- cuGCA-GAAGGUCaGCGGG-UACUAGuc -5'
8112 5' -52.9 NC_001978.2 + 28086 0.67 0.721074
Target:  5'- cGGCgGUCUUCCGGUCGCUgGgGcUCAc -3'
miRNA:   3'- -CUG-CAGAAGGUCAGCGGgUaCuAGUc -5'
8112 5' -52.9 NC_001978.2 + 10967 0.67 0.674987
Target:  5'- aGACGUCUUCCGGgccacgcUCGCCaacacgGGUCc- -3'
miRNA:   3'- -CUGCAGAAGGUC-------AGCGGgua---CUAGuc -5'
8112 5' -52.9 NC_001978.2 + 7960 0.68 0.641893
Target:  5'- gGGCGUCacgCC-GUCGCCCG-GGUCGa -3'
miRNA:   3'- -CUGCAGaa-GGuCAGCGGGUaCUAGUc -5'
8112 5' -52.9 NC_001978.2 + 317 0.69 0.562178
Target:  5'- uACGUCcuugCCGGUCGCCUucagGUGcgCGGg -3'
miRNA:   3'- cUGCAGaa--GGUCAGCGGG----UACuaGUC- -5'
8112 5' -52.9 NC_001978.2 + 22381 1.1 0.000995
Target:  5'- cGACGUCUUCCAGUCGCCCAUGAUCAGg -3'
miRNA:   3'- -CUGCAGAAGGUCAGCGGGUACUAGUC- -5'
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.