Results 1 - 8 of 8 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# |
P value![]() |
Predicted miRNA align pattern | |||||||
8112 | 5' | -52.9 | NC_001978.2 | + | 7331 | 0.65 | 0.782285 |
Target: 5'- gGACGUCUcaagaacggucgucUUCAcGcCGCCCGUG-UCAGu -3' miRNA: 3'- -CUGCAGA--------------AGGU-CaGCGGGUACuAGUC- -5' |
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8112 | 5' | -52.9 | NC_001978.2 | + | 25512 | 0.66 | 0.753828 |
Target: 5'- cGACGUCguucgcCCGGUuccCGCgCAUGGUCGu -3' miRNA: 3'- -CUGCAGaa----GGUCA---GCGgGUACUAGUc -5' |
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8112 | 5' | -52.9 | NC_001978.2 | + | 35269 | 0.66 | 0.732105 |
Target: 5'- -gUGUcCUUCCGG-CGCCCgAUGAUCc- -3' miRNA: 3'- cuGCA-GAAGGUCaGCGGG-UACUAGuc -5' |
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8112 | 5' | -52.9 | NC_001978.2 | + | 28086 | 0.67 | 0.721074 |
Target: 5'- cGGCgGUCUUCCGGUCGCUgGgGcUCAc -3' miRNA: 3'- -CUG-CAGAAGGUCAGCGGgUaCuAGUc -5' |
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8112 | 5' | -52.9 | NC_001978.2 | + | 10967 | 0.67 | 0.674987 |
Target: 5'- aGACGUCUUCCGGgccacgcUCGCCaacacgGGUCc- -3' miRNA: 3'- -CUGCAGAAGGUC-------AGCGGgua---CUAGuc -5' |
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8112 | 5' | -52.9 | NC_001978.2 | + | 7960 | 0.68 | 0.641893 |
Target: 5'- gGGCGUCacgCC-GUCGCCCG-GGUCGa -3' miRNA: 3'- -CUGCAGaa-GGuCAGCGGGUaCUAGUc -5' |
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8112 | 5' | -52.9 | NC_001978.2 | + | 317 | 0.69 | 0.562178 |
Target: 5'- uACGUCcuugCCGGUCGCCUucagGUGcgCGGg -3' miRNA: 3'- cUGCAGaa--GGUCAGCGGG----UACuaGUC- -5' |
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8112 | 5' | -52.9 | NC_001978.2 | + | 22381 | 1.1 | 0.000995 |
Target: 5'- cGACGUCUUCCAGUCGCCCAUGAUCAGg -3' miRNA: 3'- -CUGCAGAAGGUCAGCGGGUACUAGUC- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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