miRNA display CGI


Results 1 - 20 of 27 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
8113 3' -54.7 NC_001978.2 + 41223 0.66 0.674868
Target:  5'- cGUAAGGcAGUgGGCGcgcACUgUGCUACCu -3'
miRNA:   3'- uCAUUCCcUCAgCCGU---UGG-GCGAUGG- -5'
8113 3' -54.7 NC_001978.2 + 40697 0.71 0.388435
Target:  5'- cGUAaucAGGGGGUCGGCggUUCGaauCCg -3'
miRNA:   3'- uCAU---UCCCUCAGCCGuuGGGCgauGG- -5'
8113 3' -54.7 NC_001978.2 + 40350 0.68 0.573879
Target:  5'- --cGGGGGAc-CGGCcgacccuuCCCGCUGCCc -3'
miRNA:   3'- ucaUUCCCUcaGCCGuu------GGGCGAUGG- -5'
8113 3' -54.7 NC_001978.2 + 36248 0.97 0.005798
Target:  5'- cAGUAAGGGAGUCGGCAACCCGggACUa -3'
miRNA:   3'- -UCAUUCCCUCAGCCGUUGGGCgaUGG- -5'
8113 3' -54.7 NC_001978.2 + 35528 0.76 0.178266
Target:  5'- -----cGGAGaCGGCAuACCCGCUGCCg -3'
miRNA:   3'- ucauucCCUCaGCCGU-UGGGCGAUGG- -5'
8113 3' -54.7 NC_001978.2 + 31220 0.83 0.057783
Target:  5'- cAGUAAGGaAGUCGGCAACCCGggGCg -3'
miRNA:   3'- -UCAUUCCcUCAGCCGUUGGGCgaUGg -5'
8113 3' -54.7 NC_001978.2 + 30506 0.66 0.674868
Target:  5'- cGGcAAGGGAaccGUCGGCGuCCgCGUUcucaGCCg -3'
miRNA:   3'- -UCaUUCCCU---CAGCCGUuGG-GCGA----UGG- -5'
8113 3' -54.7 NC_001978.2 + 29938 0.8 0.10701
Target:  5'- gGGUAAGGaAGUCGGCAACCCGg-GCa -3'
miRNA:   3'- -UCAUUCCcUCAGCCGUUGGGCgaUGg -5'
8113 3' -54.7 NC_001978.2 + 27616 0.95 0.008619
Target:  5'- cGUAAGGGAGUCGGCAACCCGggggaaUGCCg -3'
miRNA:   3'- uCAUUCCCUCAGCCGUUGGGCg-----AUGG- -5'
8113 3' -54.7 NC_001978.2 + 27526 0.66 0.674868
Target:  5'- gAGUAGcuuGGGGGcgcuUCGGCAuuccCCCggGUUGCCg -3'
miRNA:   3'- -UCAUU---CCCUC----AGCCGUu---GGG--CGAUGG- -5'
8113 3' -54.7 NC_001978.2 + 26256 0.69 0.497691
Target:  5'- cGUGAccuGGGugaAGUCGGCAACgCGCgUGCg -3'
miRNA:   3'- uCAUU---CCC---UCAGCCGUUGgGCG-AUGg -5'
8113 3' -54.7 NC_001978.2 + 25089 0.89 0.022785
Target:  5'- cGUAAGGGAGUCGGCAACCCgGCUc-- -3'
miRNA:   3'- uCAUUCCCUCAGCCGUUGGG-CGAugg -5'
8113 3' -54.7 NC_001978.2 + 23069 0.66 0.674868
Target:  5'- -cUGAaGGAcGUCGGCAACCCGg-GCg -3'
miRNA:   3'- ucAUUcCCU-CAGCCGUUGGGCgaUGg -5'
8113 3' -54.7 NC_001978.2 + 22705 1.13 0.000431
Target:  5'- gAGUAAGGGAGUCGGCAACCCGCUACCg -3'
miRNA:   3'- -UCAUUCCCUCAGCCGUUGGGCGAUGG- -5'
8113 3' -54.7 NC_001978.2 + 20882 0.7 0.426368
Target:  5'- cGGgcAGGGAaUCGaGCuucCCCGCUACg -3'
miRNA:   3'- -UCauUCCCUcAGC-CGuu-GGGCGAUGg -5'
8113 3' -54.7 NC_001978.2 + 20752 0.73 0.281314
Target:  5'- --cGAGGGAGUUGuGCGcCCC-CUGCCg -3'
miRNA:   3'- ucaUUCCCUCAGC-CGUuGGGcGAUGG- -5'
8113 3' -54.7 NC_001978.2 + 18531 0.82 0.077649
Target:  5'- cGUGaAGGGAGUCGGCAACCUGagcggcgcuaUGCCc -3'
miRNA:   3'- uCAU-UCCCUCAGCCGUUGGGCg---------AUGG- -5'
8113 3' -54.7 NC_001978.2 + 18306 0.66 0.65244
Target:  5'- gAGUGAGauuugagccGGAGcCGGCAuGCCCGa-ACCc -3'
miRNA:   3'- -UCAUUC---------CCUCaGCCGU-UGGGCgaUGG- -5'
8113 3' -54.7 NC_001978.2 + 18268 0.68 0.551742
Target:  5'- uGUAAGGGGGcgccaUgGGCGACCacaGCaaGCCg -3'
miRNA:   3'- uCAUUCCCUC-----AgCCGUUGGg--CGa-UGG- -5'
8113 3' -54.7 NC_001978.2 + 17238 0.79 0.110145
Target:  5'- cAGgcuGGGGAGUCGGCGcacuACCCGCgcacgGCUu -3'
miRNA:   3'- -UCau-UCCCUCAGCCGU----UGGGCGa----UGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.