miRNA display CGI


Results 1 - 10 of 10 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
8114 3' -56.9 NC_001978.2 + 15069 0.66 0.44366
Target:  5'- gAAGuGGCgGAGCUGCGGCGUgagaaucgugagcuUCGCGACc -3'
miRNA:   3'- -UUC-UCGaCUCGGUGUCGCA--------------GGCGUUG- -5'
8114 3' -56.9 NC_001978.2 + 8171 0.67 0.406252
Target:  5'- --aAGCUcGAcaaguccauuaagGUCACGGCGUCCGCGAa -3'
miRNA:   3'- uucUCGA-CU-------------CGGUGUCGCAGGCGUUg -5'
8114 3' -56.9 NC_001978.2 + 5139 0.68 0.352267
Target:  5'- gAAGAGac--GUCACAGCGUCCGUcGCc -3'
miRNA:   3'- -UUCUCgacuCGGUGUCGCAGGCGuUG- -5'
8114 3' -56.9 NC_001978.2 + 16382 0.68 0.343635
Target:  5'- -cGAGCgGGGCaACucCGUCCGCAGCg -3'
miRNA:   3'- uuCUCGaCUCGgUGucGCAGGCGUUG- -5'
8114 3' -56.9 NC_001978.2 + 36784 0.7 0.265778
Target:  5'- cGGAGcCUGAGCCGgAGCcugCCGaCGACg -3'
miRNA:   3'- uUCUC-GACUCGGUgUCGca-GGC-GUUG- -5'
8114 3' -56.9 NC_001978.2 + 32222 0.71 0.252033
Target:  5'- uGAG-GCUGAGCgGCAGCGcgccaUUCGCGAa -3'
miRNA:   3'- -UUCuCGACUCGgUGUCGC-----AGGCGUUg -5'
8114 3' -56.9 NC_001978.2 + 15638 0.71 0.245382
Target:  5'- -cGAGCcacUGAGCCuCAGUGccggugaagccuUCCGCAACa -3'
miRNA:   3'- uuCUCG---ACUCGGuGUCGC------------AGGCGUUG- -5'
8114 3' -56.9 NC_001978.2 + 39861 0.71 0.226303
Target:  5'- cAAGGGCguucaGGGCguCGGCGcgcUCCGCAACa -3'
miRNA:   3'- -UUCUCGa----CUCGguGUCGC---AGGCGUUG- -5'
8114 3' -56.9 NC_001978.2 + 35812 0.72 0.208495
Target:  5'- -cGAGCUGGGCgACGGCGUugccaagggcuUCGCAugGCg -3'
miRNA:   3'- uuCUCGACUCGgUGUCGCA-----------GGCGU--UG- -5'
8114 3' -56.9 NC_001978.2 + 23316 1.08 0.00041
Target:  5'- gAAGAGCUGAGCCACAGCGUCCGCAACg -3'
miRNA:   3'- -UUCUCGACUCGGUGUCGCAGGCGUUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.