miRNA display CGI


Results 1 - 20 of 21 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
8114 5' -52.3 NC_001978.2 + 9819 0.66 0.834865
Target:  5'- aGGUCGAcg-GCGCgGCgaaGUCG-GCa -3'
miRNA:   3'- gCCAGCUcuaUGCGgUGaa-CAGCuCG- -5'
8114 5' -52.3 NC_001978.2 + 8258 0.66 0.824647
Target:  5'- aCGGcgcccuUCGcGG-ACGCCgugaccuuaauggACUUGUCGAGCu -3'
miRNA:   3'- -GCC------AGCuCUaUGCGG-------------UGAACAGCUCG- -5'
8114 5' -52.3 NC_001978.2 + 14154 0.66 0.807372
Target:  5'- cCGGUCGAGuggucggcuaucggGCGCgGCauggUGUCcGGCa -3'
miRNA:   3'- -GCCAGCUCua------------UGCGgUGa---ACAGcUCG- -5'
8114 5' -52.3 NC_001978.2 + 33820 0.67 0.765774
Target:  5'- -uGUCGAcgugACGUCGCUcgacUGUCGGGCc -3'
miRNA:   3'- gcCAGCUcua-UGCGGUGA----ACAGCUCG- -5'
8114 5' -52.3 NC_001978.2 + 7562 0.67 0.744541
Target:  5'- uGGUCGAGuucgACGCgACgucgcUUGAGCu -3'
miRNA:   3'- gCCAGCUCua--UGCGgUGaac--AGCUCG- -5'
8114 5' -52.3 NC_001978.2 + 430 0.68 0.733737
Target:  5'- cCGGUCGcgcacccGAUGCuUCGCUaUGUCGAGUc -3'
miRNA:   3'- -GCCAGCu------CUAUGcGGUGA-ACAGCUCG- -5'
8114 5' -52.3 NC_001978.2 + 32443 0.68 0.733737
Target:  5'- aGGUUGuG-UGCGCC-CUUccaugcGUCGAGCc -3'
miRNA:   3'- gCCAGCuCuAUGCGGuGAA------CAGCUCG- -5'
8114 5' -52.3 NC_001978.2 + 33916 0.68 0.722825
Target:  5'- aCGGUCGgcacccGGGUaACGCCGuCggcccgacaGUCGAGCg -3'
miRNA:   3'- -GCCAGC------UCUA-UGCGGU-Gaa-------CAGCUCG- -5'
8114 5' -52.3 NC_001978.2 + 39714 0.68 0.689565
Target:  5'- -uGUUGaAGAUGCGUUccgcaacgaACUUGUCGAGUg -3'
miRNA:   3'- gcCAGC-UCUAUGCGG---------UGAACAGCUCG- -5'
8114 5' -52.3 NC_001978.2 + 24776 0.69 0.667077
Target:  5'- aGcGUCGGGcgACGgCAUacgggGUCGAGCa -3'
miRNA:   3'- gC-CAGCUCuaUGCgGUGaa---CAGCUCG- -5'
8114 5' -52.3 NC_001978.2 + 9653 0.69 0.633113
Target:  5'- cCGGUCGcGAaggACGCCcuagacaagacGCUUGaCGGGCu -3'
miRNA:   3'- -GCCAGCuCUa--UGCGG-----------UGAACaGCUCG- -5'
8114 5' -52.3 NC_001978.2 + 5373 0.7 0.576622
Target:  5'- gGGUCGGGcgAcCGCCGggaUUGUCG-GCg -3'
miRNA:   3'- gCCAGCUCuaU-GCGGUg--AACAGCuCG- -5'
8114 5' -52.3 NC_001978.2 + 6412 0.71 0.554299
Target:  5'- cCGaUCGGGaAUGCGCgaCACgugGUCGAGCa -3'
miRNA:   3'- -GCcAGCUC-UAUGCG--GUGaa-CAGCUCG- -5'
8114 5' -52.3 NC_001978.2 + 39055 0.71 0.543231
Target:  5'- uGGUCGAG-UGCGCaaGCUUGUUGAu- -3'
miRNA:   3'- gCCAGCUCuAUGCGg-UGAACAGCUcg -5'
8114 5' -52.3 NC_001978.2 + 29319 0.72 0.499769
Target:  5'- -aGUCGAGAagcccaGCGUCACgcaUGUUGAGCa -3'
miRNA:   3'- gcCAGCUCUa-----UGCGGUGa--ACAGCUCG- -5'
8114 5' -52.3 NC_001978.2 + 37822 0.73 0.437705
Target:  5'- gGGUUGAGGgguCGCCGuc-GUCGGGCa -3'
miRNA:   3'- gCCAGCUCUau-GCGGUgaaCAGCUCG- -5'
8114 5' -52.3 NC_001978.2 + 23865 0.74 0.389514
Target:  5'- gGGUCGAGcgcUGCCACUaGUCG-GCa -3'
miRNA:   3'- gCCAGCUCuauGCGGUGAaCAGCuCG- -5'
8114 5' -52.3 NC_001978.2 + 32529 0.74 0.388586
Target:  5'- uCGGUCGAGucgGCaccgugaGCCACUgggCGAGCg -3'
miRNA:   3'- -GCCAGCUCua-UG-------CGGUGAacaGCUCG- -5'
8114 5' -52.3 NC_001978.2 + 36885 0.75 0.311987
Target:  5'- cCGGUUGAGGUcGCuGCCGCUgccgGUCG-GCa -3'
miRNA:   3'- -GCCAGCUCUA-UG-CGGUGAa---CAGCuCG- -5'
8114 5' -52.3 NC_001978.2 + 11524 0.75 0.311987
Target:  5'- aGGUCGAGcgGCGCCgaccGCUUG-CGuGCc -3'
miRNA:   3'- gCCAGCUCuaUGCGG----UGAACaGCuCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.