miRNA display CGI


Results 1 - 15 of 15 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
8115 3' -54 NC_001978.2 + 981 0.66 0.740755
Target:  5'- gCUUCuCGGCGggaGUCu--GGCGGggGCg -3'
miRNA:   3'- -GAAGuGCCGCag-CAGucuUCGCCa-CG- -5'
8115 3' -54 NC_001978.2 + 37513 0.66 0.739683
Target:  5'- --gCGCGaGCGUCGUCuGucuucgucggcguAGGCGGaGCg -3'
miRNA:   3'- gaaGUGC-CGCAGCAGuC-------------UUCGCCaCG- -5'
8115 3' -54 NC_001978.2 + 27934 0.66 0.719121
Target:  5'- --aCGgGGCGUUGUggaucaggaacCGGggGCaGUGCu -3'
miRNA:   3'- gaaGUgCCGCAGCA-----------GUCuuCGcCACG- -5'
8115 3' -54 NC_001978.2 + 26845 0.67 0.679336
Target:  5'- -gUCAUGGCGUCcgaaggcgaGUCgggcaagcccaugucGGAAGCuGUGCu -3'
miRNA:   3'- gaAGUGCCGCAG---------CAG---------------UCUUCGcCACG- -5'
8115 3' -54 NC_001978.2 + 16278 0.67 0.674868
Target:  5'- -gUCACGGCGUUcggGUCGGcAAGCuGGg-- -3'
miRNA:   3'- gaAGUGCCGCAG---CAGUC-UUCG-CCacg -5'
8115 3' -54 NC_001978.2 + 26058 0.68 0.618679
Target:  5'- aCUUgACGGCGUCGUgCAGucGGCuGGggaacuUGCc -3'
miRNA:   3'- -GAAgUGCCGCAGCA-GUCu-UCG-CC------ACG- -5'
8115 3' -54 NC_001978.2 + 27321 0.68 0.585026
Target:  5'- -aUCGCGGaGUCGUCGGcAGCGucgaGCa -3'
miRNA:   3'- gaAGUGCCgCAGCAGUCuUCGCca--CG- -5'
8115 3' -54 NC_001978.2 + 34672 0.68 0.573879
Target:  5'- --gCugGGCGUUcaGUCGGucGCGGaGCu -3'
miRNA:   3'- gaaGugCCGCAG--CAGUCuuCGCCaCG- -5'
8115 3' -54 NC_001978.2 + 5204 0.69 0.562781
Target:  5'- ---aACGGCGUCGUC-GucGUGGUcgGCg -3'
miRNA:   3'- gaagUGCCGCAGCAGuCuuCGCCA--CG- -5'
8115 3' -54 NC_001978.2 + 27101 0.69 0.519054
Target:  5'- gCUUCggGCGGaGUCGgCGGGcauuguggccugGGCGGUGCg -3'
miRNA:   3'- -GAAG--UGCCgCAGCaGUCU------------UCGCCACG- -5'
8115 3' -54 NC_001978.2 + 23818 0.7 0.508325
Target:  5'- -cUCGaccCGGCGUCGcCGGAAGCcuGG-GCa -3'
miRNA:   3'- gaAGU---GCCGCAGCaGUCUUCG--CCaCG- -5'
8115 3' -54 NC_001978.2 + 31727 0.72 0.388435
Target:  5'- -gUCAUaaagGGCGUCGUCGGcgaaaGGGCuggGGUGCg -3'
miRNA:   3'- gaAGUG----CCGCAGCAGUC-----UUCG---CCACG- -5'
8115 3' -54 NC_001978.2 + 31678 0.72 0.352786
Target:  5'- cCUUUAUGacauuGCGUCGUUu-GAGCGGUGCg -3'
miRNA:   3'- -GAAGUGC-----CGCAGCAGucUUCGCCACG- -5'
8115 3' -54 NC_001978.2 + 30314 0.75 0.240366
Target:  5'- cCUUCACGGCGuuuUCGUCGGccccGGCGuUGCc -3'
miRNA:   3'- -GAAGUGCCGC---AGCAGUCu---UCGCcACG- -5'
8115 3' -54 NC_001978.2 + 23924 1.13 0.000551
Target:  5'- cCUUCACGGCGUCGUCAGAAGCGGUGCg -3'
miRNA:   3'- -GAAGUGCCGCAGCAGUCUUCGCCACG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.