miRNA display CGI


Results 1 - 20 of 38 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
8116 3' -53.6 NC_001978.2 + 15407 0.71 0.468291
Target:  5'- --aUCUGAccGGCGUCguugGCGCgcgCACCUa -3'
miRNA:   3'- ggaAGGCU--UCGCAGaa--CGCGa--GUGGG- -5'
8116 3' -53.6 NC_001978.2 + 34123 0.66 0.773989
Target:  5'- cCCUUCCGgcGUGcCcgggugUGCGUcCGCCg -3'
miRNA:   3'- -GGAAGGCuuCGCaGa-----ACGCGaGUGGg -5'
8116 3' -53.6 NC_001978.2 + 41155 0.66 0.731777
Target:  5'- gCCaUgCGAAGCGgcgUGCuGCuaUCGCCCg -3'
miRNA:   3'- -GGaAgGCUUCGCagaACG-CG--AGUGGG- -5'
8116 3' -53.6 NC_001978.2 + 32436 0.66 0.731777
Target:  5'- gCCUuaCGA--CGUUcUGuCGCUCGCCCa -3'
miRNA:   3'- -GGAagGCUucGCAGaAC-GCGAGUGGG- -5'
8116 3' -53.6 NC_001978.2 + 27211 0.66 0.720933
Target:  5'- ---aCCGGGcGaCGUCcgaUGCGCUCGCCg -3'
miRNA:   3'- ggaaGGCUU-C-GCAGa--ACGCGAGUGGg -5'
8116 3' -53.6 NC_001978.2 + 26309 0.67 0.698981
Target:  5'- ----gCGcGGCG-CUUGUGCUCGCCg -3'
miRNA:   3'- ggaagGCuUCGCaGAACGCGAGUGGg -5'
8116 3' -53.6 NC_001978.2 + 16275 0.68 0.643118
Target:  5'- aCCgcugCCGA--CGUUgggGCGCUCGCCa -3'
miRNA:   3'- -GGaa--GGCUucGCAGaa-CGCGAGUGGg -5'
8116 3' -53.6 NC_001978.2 + 37211 0.68 0.631869
Target:  5'- uCCUUCCGAAcGCGcCaUGUGCgaagACCUa -3'
miRNA:   3'- -GGAAGGCUU-CGCaGaACGCGag--UGGG- -5'
8116 3' -53.6 NC_001978.2 + 36814 0.69 0.564732
Target:  5'- aCgUUCCGgcGCGUCUgcCGaaCGCCCa -3'
miRNA:   3'- -GgAAGGCuuCGCAGAacGCgaGUGGG- -5'
8116 3' -53.6 NC_001978.2 + 28427 0.69 0.553689
Target:  5'- ---gCCGAAGCGUugCUUGCcaugggcgagacGCUgACCCa -3'
miRNA:   3'- ggaaGGCUUCGCA--GAACG------------CGAgUGGG- -5'
8116 3' -53.6 NC_001978.2 + 21817 0.71 0.478619
Target:  5'- aUCUaCCGggGCGgCUcGCGCUucuacgucCACCCu -3'
miRNA:   3'- -GGAaGGCuuCGCaGAaCGCGA--------GUGGG- -5'
8116 3' -53.6 NC_001978.2 + 15610 0.66 0.731777
Target:  5'- gCCUUCCGcaacAGCGaCUUcguacGCGCUgggACCCg -3'
miRNA:   3'- -GGAAGGCu---UCGCaGAA-----CGCGAg--UGGG- -5'
8116 3' -53.6 NC_001978.2 + 13154 0.66 0.742517
Target:  5'- gCCguaCCGGcAGCGUUcaGCGuCUCGCCg -3'
miRNA:   3'- -GGaa-GGCU-UCGCAGaaCGC-GAGUGGg -5'
8116 3' -53.6 NC_001978.2 + 19287 0.66 0.742517
Target:  5'- cCCUUCguuguCGuuGUGgugCUU-CGCUCACCCu -3'
miRNA:   3'- -GGAAG-----GCuuCGCa--GAAcGCGAGUGGG- -5'
8116 3' -53.6 NC_001978.2 + 24343 0.66 0.746781
Target:  5'- uCCgcCCGggGCGUg-UGUcuguucagccguucuGUUCGCCCg -3'
miRNA:   3'- -GGaaGGCuuCGCAgaACG---------------CGAGUGGG- -5'
8116 3' -53.6 NC_001978.2 + 31824 0.66 0.753141
Target:  5'- cCCggaagCCGGAcGCGUCgagUGCGUcagucCAUCCg -3'
miRNA:   3'- -GGaa---GGCUU-CGCAGa--ACGCGa----GUGGG- -5'
8116 3' -53.6 NC_001978.2 + 33719 0.66 0.773989
Target:  5'- aCCggCUGAAGCGUCgu-CGuCUUGCCg -3'
miRNA:   3'- -GGaaGGCUUCGCAGaacGC-GAGUGGg -5'
8116 3' -53.6 NC_001978.2 + 25034 0.66 0.773989
Target:  5'- cCCaUUCgGcAAGCGUCUUcGCGCccUUGCUCa -3'
miRNA:   3'- -GG-AAGgC-UUCGCAGAA-CGCG--AGUGGG- -5'
8116 3' -53.6 NC_001978.2 + 20667 0.66 0.773989
Target:  5'- --cUUCGu--CGUCUUGCGCUcCGCCg -3'
miRNA:   3'- ggaAGGCuucGCAGAACGCGA-GUGGg -5'
8116 3' -53.6 NC_001978.2 + 24257 1.15 0.000478
Target:  5'- uCCUUCCGAAGCGUCUUGCGCUCACCCa -3'
miRNA:   3'- -GGAAGGCUUCGCAGAACGCGAGUGGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.