miRNA display CGI


Results 21 - 38 of 38 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
8116 3' -53.6 NC_001978.2 + 25034 0.66 0.773989
Target:  5'- cCCaUUCgGcAAGCGUCUUcGCGCccUUGCUCa -3'
miRNA:   3'- -GG-AAGgC-UUCGCAGAA-CGCG--AGUGGG- -5'
8116 3' -53.6 NC_001978.2 + 26309 0.67 0.698981
Target:  5'- ----gCGcGGCG-CUUGUGCUCGCCg -3'
miRNA:   3'- ggaagGCuUCGCaGAACGCGAGUGGg -5'
8116 3' -53.6 NC_001978.2 + 27211 0.66 0.720933
Target:  5'- ---aCCGGGcGaCGUCcgaUGCGCUCGCCg -3'
miRNA:   3'- ggaaGGCUU-C-GCAGa--ACGCGAGUGGg -5'
8116 3' -53.6 NC_001978.2 + 28427 0.69 0.553689
Target:  5'- ---gCCGAAGCGUugCUUGCcaugggcgagacGCUgACCCa -3'
miRNA:   3'- ggaaGGCUUCGCA--GAACG------------CGAgUGGG- -5'
8116 3' -53.6 NC_001978.2 + 28514 0.68 0.643118
Target:  5'- uCCgUCCGcuGgGUCa-GCGuCUCGCCCa -3'
miRNA:   3'- -GGaAGGCuuCgCAGaaCGC-GAGUGGG- -5'
8116 3' -53.6 NC_001978.2 + 28829 0.7 0.510246
Target:  5'- --aUCCGggGCGUCUccgacaaucGCGCggcgaaUCAUCCa -3'
miRNA:   3'- ggaAGGCuuCGCAGAa--------CGCG------AGUGGG- -5'
8116 3' -53.6 NC_001978.2 + 30315 0.66 0.719843
Target:  5'- aCCUUCacggcguuuucguCGGccccGGCGUUgccgUUGCGCUCuuCCCg -3'
miRNA:   3'- -GGAAG-------------GCU----UCGCAG----AACGCGAGu-GGG- -5'
8116 3' -53.6 NC_001978.2 + 31824 0.66 0.753141
Target:  5'- cCCggaagCCGGAcGCGUCgagUGCGUcagucCAUCCg -3'
miRNA:   3'- -GGaa---GGCUU-CGCAGa--ACGCGa----GUGGG- -5'
8116 3' -53.6 NC_001978.2 + 32391 0.68 0.631869
Target:  5'- gCUUCUGugacGcCGUCUUGCGUggCGCCUu -3'
miRNA:   3'- gGAAGGCuu--C-GCAGAACGCGa-GUGGG- -5'
8116 3' -53.6 NC_001978.2 + 32436 0.66 0.731777
Target:  5'- gCCUuaCGA--CGUUcUGuCGCUCGCCCa -3'
miRNA:   3'- -GGAagGCUucGCAGaAC-GCGAGUGGG- -5'
8116 3' -53.6 NC_001978.2 + 33719 0.66 0.773989
Target:  5'- aCCggCUGAAGCGUCgu-CGuCUUGCCg -3'
miRNA:   3'- -GGaaGGCUUCGCAGaacGC-GAGUGGg -5'
8116 3' -53.6 NC_001978.2 + 34123 0.66 0.773989
Target:  5'- cCCUUCCGgcGUGcCcgggugUGCGUcCGCCg -3'
miRNA:   3'- -GGAAGGCuuCGCaGa-----ACGCGaGUGGg -5'
8116 3' -53.6 NC_001978.2 + 36814 0.69 0.564732
Target:  5'- aCgUUCCGgcGCGUCUgcCGaaCGCCCa -3'
miRNA:   3'- -GgAAGGCuuCGCAGAacGCgaGUGGG- -5'
8116 3' -53.6 NC_001978.2 + 37211 0.68 0.631869
Target:  5'- uCCUUCCGAAcGCGcCaUGUGCgaagACCUa -3'
miRNA:   3'- -GGAAGGCUU-CGCaGaACGCGag--UGGG- -5'
8116 3' -53.6 NC_001978.2 + 38209 0.7 0.520983
Target:  5'- gCCUUCgGGA-CGUCa-GCgGCUCGCCCc -3'
miRNA:   3'- -GGAAGgCUUcGCAGaaCG-CGAGUGGG- -5'
8116 3' -53.6 NC_001978.2 + 39786 0.74 0.313107
Target:  5'- gCUUgCCGAAGCGUCggGCgGCUU-CCCa -3'
miRNA:   3'- gGAA-GGCUUCGCAGaaCG-CGAGuGGG- -5'
8116 3' -53.6 NC_001978.2 + 39962 0.72 0.408899
Target:  5'- cCCUUgcugCCGGAGCGUCa-GCGCU-GCCUg -3'
miRNA:   3'- -GGAA----GGCUUCGCAGaaCGCGAgUGGG- -5'
8116 3' -53.6 NC_001978.2 + 41155 0.66 0.731777
Target:  5'- gCCaUgCGAAGCGgcgUGCuGCuaUCGCCCg -3'
miRNA:   3'- -GGaAgGCUUCGCagaACG-CG--AGUGGG- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.