miRNA display CGI


Results 1 - 20 of 42 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
8116 5' -56.1 NC_001978.2 + 32539 0.66 0.640819
Target:  5'- aGGucGUCAGuCgGUCGaGUCGGCaccgUGAGCCa -3'
miRNA:   3'- gCCu-CAGUU-G-CGGC-CAGCCG----ACUUGG- -5'
8116 5' -56.1 NC_001978.2 + 23329 0.66 0.640819
Target:  5'- cCGGGGUgc-CGCCGaa-GaGCUGAGCCa -3'
miRNA:   3'- -GCCUCAguuGCGGCcagC-CGACUUGG- -5'
8116 5' -56.1 NC_001978.2 + 32128 0.66 0.640819
Target:  5'- aGGcgcGUCAGCuuGCCGcaUGGCUGAACg -3'
miRNA:   3'- gCCu--CAGUUG--CGGCcaGCCGACUUGg -5'
8116 5' -56.1 NC_001978.2 + 10084 0.66 0.637511
Target:  5'- uGGGGcguucagucgaccaUCAACGCCGGUaaGGCagUGGucGCCu -3'
miRNA:   3'- gCCUC--------------AGUUGCGGCCAg-CCG--ACU--UGG- -5'
8116 5' -56.1 NC_001978.2 + 13230 0.66 0.618763
Target:  5'- gCGGAGcaccaCAAgGCCGGaacgcccaGGCUGAAgCg -3'
miRNA:   3'- -GCCUCa----GUUgCGGCCag------CCGACUUgG- -5'
8116 5' -56.1 NC_001978.2 + 11451 0.66 0.618763
Target:  5'- aCGGgcacgcaagcGGUCGGCGCCGcUCGacCUGAACUu -3'
miRNA:   3'- -GCC----------UCAGUUGCGGCcAGCc-GACUUGG- -5'
8116 5' -56.1 NC_001978.2 + 35896 0.67 0.574863
Target:  5'- gGGAagGUCGGCGCCcaGGUCGucaaGAACCu -3'
miRNA:   3'- gCCU--CAGUUGCGG--CCAGCcga-CUUGG- -5'
8116 5' -56.1 NC_001978.2 + 21562 0.67 0.574863
Target:  5'- aCGGGGUgcACGUCGG-CGGagucGAGCCc -3'
miRNA:   3'- -GCCUCAguUGCGGCCaGCCga--CUUGG- -5'
8116 5' -56.1 NC_001978.2 + 33555 0.67 0.574863
Target:  5'- gCGGGugucgcccuuGUCGGCGCCGugaccGUCGGgUGuGACCc -3'
miRNA:   3'- -GCCU----------CAGUUGCGGC-----CAGCCgAC-UUGG- -5'
8116 5' -56.1 NC_001978.2 + 20352 0.67 0.574863
Target:  5'- aCGGAGcUGACGCCGGUcacccCGGa--AGCCg -3'
miRNA:   3'- -GCCUCaGUUGCGGCCA-----GCCgacUUGG- -5'
8116 5' -56.1 NC_001978.2 + 4870 0.67 0.563986
Target:  5'- cCGGGG-CAACGUCGccGUCcGGCUGGgaAUCg -3'
miRNA:   3'- -GCCUCaGUUGCGGC--CAG-CCGACU--UGG- -5'
8116 5' -56.1 NC_001978.2 + 7673 0.67 0.553163
Target:  5'- -uGAGaaAACGCCGGUCGGUcuucauGCCc -3'
miRNA:   3'- gcCUCagUUGCGGCCAGCCGacu---UGG- -5'
8116 5' -56.1 NC_001978.2 + 833 0.67 0.553163
Target:  5'- aCGGGGUCuguACGguuaCCGGcucgUCGGCUucACCu -3'
miRNA:   3'- -GCCUCAGu--UGC----GGCC----AGCCGAcuUGG- -5'
8116 5' -56.1 NC_001978.2 + 25599 0.67 0.542403
Target:  5'- gCGGcaAGU--GCcCCGGUCguuGGCUGAGCCu -3'
miRNA:   3'- -GCC--UCAguUGcGGCCAG---CCGACUUGG- -5'
8116 5' -56.1 NC_001978.2 + 11019 0.67 0.542403
Target:  5'- cCGGAacccGaCAACGCaUGGuUCGGCcGGACCg -3'
miRNA:   3'- -GCCU----CaGUUGCG-GCC-AGCCGaCUUGG- -5'
8116 5' -56.1 NC_001978.2 + 25195 0.68 0.5211
Target:  5'- gCGGGGU-GACGaCCugaaGGuUCGGCUGAcauGCCg -3'
miRNA:   3'- -GCCUCAgUUGC-GG----CC-AGCCGACU---UGG- -5'
8116 5' -56.1 NC_001978.2 + 36885 0.68 0.510571
Target:  5'- cCGGuugaGGUCGcugccGCuGCCGGUCGGCacccuGCCa -3'
miRNA:   3'- -GCC----UCAGU-----UG-CGGCCAGCCGacu--UGG- -5'
8116 5' -56.1 NC_001978.2 + 3693 0.68 0.510571
Target:  5'- gCGGugcgcguuGUCGACGCCGGaguuagCGGCac-GCCa -3'
miRNA:   3'- -GCCu-------CAGUUGCGGCCa-----GCCGacuUGG- -5'
8116 5' -56.1 NC_001978.2 + 34707 0.68 0.500132
Target:  5'- aCGGGGcUCAGuCGgC-GUCGGCUcGAACCc -3'
miRNA:   3'- -GCCUC-AGUU-GCgGcCAGCCGA-CUUGG- -5'
8116 5' -56.1 NC_001978.2 + 5203 0.68 0.479545
Target:  5'- aCGGcGUCGuCGUCguGGUCGGCgGAACg -3'
miRNA:   3'- -GCCuCAGUuGCGG--CCAGCCGaCUUGg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.