miRNA display CGI


Results 1 - 17 of 17 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
8118 3' -58.6 NC_001978.2 + 34660 0.66 0.465731
Target:  5'- gUCGgUCGCGGaGCuuGCGCGCCGUc -3'
miRNA:   3'- gGGCgAGUGCCaCGcgCGUGUGGUAa -5'
8118 3' -58.6 NC_001978.2 + 2637 0.66 0.465731
Target:  5'- -aCGC-C-CGGgGCGCGCGCAUCAc- -3'
miRNA:   3'- ggGCGaGuGCCaCGCGCGUGUGGUaa -5'
8118 3' -58.6 NC_001978.2 + 25010 0.66 0.426454
Target:  5'- cCuuGCUCA-GGuUGCacuucGCGCACGCCGg- -3'
miRNA:   3'- -GggCGAGUgCC-ACG-----CGCGUGUGGUaa -5'
8118 3' -58.6 NC_001978.2 + 3831 0.66 0.426454
Target:  5'- gUCCGaaaUCA-GGUGCgGCgGCACGCCAa- -3'
miRNA:   3'- -GGGCg--AGUgCCACG-CG-CGUGUGGUaa -5'
8118 3' -58.6 NC_001978.2 + 27998 0.66 0.426454
Target:  5'- aCCGUgCGCGGUGCuaGCGauuCCAUg -3'
miRNA:   3'- gGGCGaGUGCCACGcgCGUgu-GGUAa -5'
8118 3' -58.6 NC_001978.2 + 41091 0.66 0.426454
Target:  5'- gCUaCUCAUGGUGgGCGCugugcucaGCACCAc- -3'
miRNA:   3'- gGGcGAGUGCCACgCGCG--------UGUGGUaa -5'
8118 3' -58.6 NC_001978.2 + 36423 0.67 0.407566
Target:  5'- gCCCaUUCGCuGUGCGCGCugACgAa- -3'
miRNA:   3'- -GGGcGAGUGcCACGCGCGugUGgUaa -5'
8118 3' -58.6 NC_001978.2 + 308 0.67 0.389211
Target:  5'- gCCGgUCGCcuucaGGUGCGCGgGCACaCGg- -3'
miRNA:   3'- gGGCgAGUG-----CCACGCGCgUGUG-GUaa -5'
8118 3' -58.6 NC_001978.2 + 8090 0.67 0.380239
Target:  5'- uCCUugUCGCGGaGCGCGCGCACg--- -3'
miRNA:   3'- -GGGcgAGUGCCaCGCGCGUGUGguaa -5'
8118 3' -58.6 NC_001978.2 + 32252 0.67 0.371407
Target:  5'- aUCC-CUCAgCGGUGCGCGCgu-CCGUc -3'
miRNA:   3'- -GGGcGAGU-GCCACGCGCGuguGGUAa -5'
8118 3' -58.6 NC_001978.2 + 18965 0.68 0.345759
Target:  5'- cCCCGgUCACGaagaGCGCGCGCuuCGUUc -3'
miRNA:   3'- -GGGCgAGUGCca--CGCGCGUGugGUAA- -5'
8118 3' -58.6 NC_001978.2 + 31933 0.68 0.337497
Target:  5'- -gCGCuUCAUGGUGCGCGCucuUCGUUg -3'
miRNA:   3'- ggGCG-AGUGCCACGCGCGuguGGUAA- -5'
8118 3' -58.6 NC_001978.2 + 18806 0.68 0.329379
Target:  5'- cCCCgGCuUUugGGUGCGCGCGgcguucccCGCUAUc -3'
miRNA:   3'- -GGG-CG-AGugCCACGCGCGU--------GUGGUAa -5'
8118 3' -58.6 NC_001978.2 + 22050 0.68 0.313579
Target:  5'- -gCGCcuUCGCGGU-CGCGCGCuGCCAUg -3'
miRNA:   3'- ggGCG--AGUGCCAcGCGCGUG-UGGUAa -5'
8118 3' -58.6 NC_001978.2 + 3700 0.74 0.123268
Target:  5'- -gCGCUaCGCGGUGCGCGUugucgACGCCGg- -3'
miRNA:   3'- ggGCGA-GUGCCACGCGCG-----UGUGGUaa -5'
8118 3' -58.6 NC_001978.2 + 24624 0.8 0.046292
Target:  5'- aCCGCa-AUGGUGUGCGCGCACCGUg -3'
miRNA:   3'- gGGCGagUGCCACGCGCGUGUGGUAa -5'
8118 3' -58.6 NC_001978.2 + 24695 1.08 0.000377
Target:  5'- aCCCGCUCACGGUGCGCGCACACCAUUg -3'
miRNA:   3'- -GGGCGAGUGCCACGCGCGUGUGGUAA- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.