miRNA display CGI


Results 21 - 40 of 41 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
8118 5' -53.3 NC_001978.2 + 8832 0.69 0.521208
Target:  5'- aGCGGGGGCAcugaGCGCCG-CACGc-- -3'
miRNA:   3'- -CGUUCCCGUucg-UGCGGCuGUGUaua -5'
8118 5' -53.3 NC_001978.2 + 2744 0.69 0.5201
Target:  5'- uGCAAcGGCAaggucgaucuuccGGCGCGaCGACGCGUGUu -3'
miRNA:   3'- -CGUUcCCGU-------------UCGUGCgGCUGUGUAUA- -5'
8118 5' -53.3 NC_001978.2 + 38364 0.69 0.510163
Target:  5'- -uGGGGGCGuaGGguCGCCGACAUg--- -3'
miRNA:   3'- cgUUCCCGU--UCguGCGGCUGUGuaua -5'
8118 5' -53.3 NC_001978.2 + 33132 0.69 0.499218
Target:  5'- ---uGGGCAAGCGuuggcacguugcCGCCGACGCu--- -3'
miRNA:   3'- cguuCCCGUUCGU------------GCGGCUGUGuaua -5'
8118 5' -53.3 NC_001978.2 + 3547 0.69 0.499218
Target:  5'- gGCAAGGGCGAGCcCGauggacucaCG-CGCAUAc -3'
miRNA:   3'- -CGUUCCCGUUCGuGCg--------GCuGUGUAUa -5'
8118 5' -53.3 NC_001978.2 + 30347 0.7 0.481926
Target:  5'- -gAAGGGCAAGCgacucagcaaggaacGCGCCGAagccgcccggcuCGCGUGg -3'
miRNA:   3'- cgUUCCCGUUCG---------------UGCGGCU------------GUGUAUa -5'
8118 5' -53.3 NC_001978.2 + 16736 0.7 0.477649
Target:  5'- cGCAuAGcGGCAAGCGCGCCGGu------ -3'
miRNA:   3'- -CGU-UC-CCGUUCGUGCGGCUguguaua -5'
8118 5' -53.3 NC_001978.2 + 16773 0.7 0.477649
Target:  5'- cGCAAuGGGC-AGCggaacgGCGCCGACAUg--- -3'
miRNA:   3'- -CGUU-CCCGuUCG------UGCGGCUGUGuaua -5'
8118 5' -53.3 NC_001978.2 + 25889 0.7 0.44619
Target:  5'- aGCgAAGGGCuugccGGGCACGguaUCGACGCGUAc -3'
miRNA:   3'- -CG-UUCCCG-----UUCGUGC---GGCUGUGUAUa -5'
8118 5' -53.3 NC_001978.2 + 41229 0.71 0.415921
Target:  5'- cCAcGGGCGauagcAGCACGCCGcuuCGCAUGg -3'
miRNA:   3'- cGUuCCCGU-----UCGUGCGGCu--GUGUAUa -5'
8118 5' -53.3 NC_001978.2 + 39862 0.71 0.386942
Target:  5'- uCAAGGGCGuucAGgGCGUCGGCGCGc-- -3'
miRNA:   3'- cGUUCCCGU---UCgUGCGGCUGUGUaua -5'
8118 5' -53.3 NC_001978.2 + 4374 0.72 0.377583
Target:  5'- cGCAucguuccuGGGGCAGGgGCGCCGuCGCu--- -3'
miRNA:   3'- -CGU--------UCCCGUUCgUGCGGCuGUGuaua -5'
8118 5' -53.3 NC_001978.2 + 22101 0.72 0.359326
Target:  5'- --cGGGGUGAGUACGUCGGC-CGUGUg -3'
miRNA:   3'- cguUCCCGUUCGUGCGGCUGuGUAUA- -5'
8118 5' -53.3 NC_001978.2 + 38889 0.72 0.359326
Target:  5'- cGCGAauuGGGCGGGUACGUCGGCGgGa-- -3'
miRNA:   3'- -CGUU---CCCGUUCGUGCGGCUGUgUaua -5'
8118 5' -53.3 NC_001978.2 + 39595 0.72 0.341695
Target:  5'- cGCAccuGGGC-AGCACGaaGGCACGUGc -3'
miRNA:   3'- -CGUu--CCCGuUCGUGCggCUGUGUAUa -5'
8118 5' -53.3 NC_001978.2 + 38137 0.72 0.333117
Target:  5'- cGCAcGGGGCGAGC-CGCUGACgucccgaagGCGUGg -3'
miRNA:   3'- -CGU-UCCCGUUCGuGCGGCUG---------UGUAUa -5'
8118 5' -53.3 NC_001978.2 + 32645 0.73 0.324698
Target:  5'- aGCAAGGGCGaaggguucAGCGcCGUCGugGCAa-- -3'
miRNA:   3'- -CGUUCCCGU--------UCGU-GCGGCugUGUaua -5'
8118 5' -53.3 NC_001978.2 + 9039 0.74 0.275314
Target:  5'- aGCAAGGGCAAGCcccuucgccuguucGCcgaacGCCGACACu--- -3'
miRNA:   3'- -CGUUCCCGUUCG--------------UG-----CGGCUGUGuaua -5'
8118 5' -53.3 NC_001978.2 + 39770 0.74 0.269492
Target:  5'- gGCGAacGGGCGaaccuuguugcggAGCGCGCCGACGCc--- -3'
miRNA:   3'- -CGUU--CCCGU-------------UCGUGCGGCUGUGuaua -5'
8118 5' -53.3 NC_001978.2 + 30765 0.76 0.194236
Target:  5'- gGCAAGGGCGucgAGCACGuaCCGGCGCu--- -3'
miRNA:   3'- -CGUUCCCGU---UCGUGC--GGCUGUGuaua -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.