miRNA display CGI


Results 1 - 13 of 13 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
8119 3' -55.3 NC_001978.2 + 31982 0.67 0.537842
Target:  5'- aUGAAcGCGCCCCAGGAauuccgucggucacuUGaagaGCGAc- -3'
miRNA:   3'- -ACUU-CGCGGGGUCCU---------------ACgaa-CGCUuc -5'
8119 3' -55.3 NC_001978.2 + 24568 0.67 0.500821
Target:  5'- cGAcGCGCCCCGGGuuaugGCgUUGCucAGc -3'
miRNA:   3'- aCUuCGCGGGGUCCua---CG-AACGcuUC- -5'
8119 3' -55.3 NC_001978.2 + 32822 0.68 0.479574
Target:  5'- cUGAAGUGCCCCugagcgAGGAUGUU-GCccAGg -3'
miRNA:   3'- -ACUUCGCGGGG------UCCUACGAaCGcuUC- -5'
8119 3' -55.3 NC_001978.2 + 32977 0.69 0.428514
Target:  5'- cGAAGCGCUUCAGGcguacgacGCUgggGUGAAGc -3'
miRNA:   3'- aCUUCGCGGGGUCCua------CGAa--CGCUUC- -5'
8119 3' -55.3 NC_001978.2 + 6421 0.69 0.428514
Target:  5'- cUGAAGCGCCCgauCGGGaAUGC--GCGAc- -3'
miRNA:   3'- -ACUUCGCGGG---GUCC-UACGaaCGCUuc -5'
8119 3' -55.3 NC_001978.2 + 37252 0.69 0.409005
Target:  5'- gGAcGGCGCUCCGucaGGUGCUcGCGAAGc -3'
miRNA:   3'- aCU-UCGCGGGGUc--CUACGAaCGCUUC- -5'
8119 3' -55.3 NC_001978.2 + 37853 0.69 0.409005
Target:  5'- cGAAGUGCCCCu---UGUcgGCGggGg -3'
miRNA:   3'- aCUUCGCGGGGuccuACGaaCGCuuC- -5'
8119 3' -55.3 NC_001978.2 + 8809 0.69 0.39006
Target:  5'- cGAAGCGCgCCGgucGGggGCgaaGCGggGg -3'
miRNA:   3'- aCUUCGCGgGGU---CCuaCGaa-CGCuuC- -5'
8119 3' -55.3 NC_001978.2 + 16421 0.7 0.353061
Target:  5'- cGAAGCGUggucggucuaCCCGGGcgGCguggugaacccggUUGCGAAGu -3'
miRNA:   3'- aCUUCGCG----------GGGUCCuaCG-------------AACGCUUC- -5'
8119 3' -55.3 NC_001978.2 + 41464 0.71 0.312196
Target:  5'- cGGAGcCGCCCCGcccccucagaacGGAcGCUUGcCGAAGu -3'
miRNA:   3'- aCUUC-GCGGGGU------------CCUaCGAAC-GCUUC- -5'
8119 3' -55.3 NC_001978.2 + 39801 0.72 0.289
Target:  5'- -cAGGCGCCUCAGuGA-GCUUGcCGAAGc -3'
miRNA:   3'- acUUCGCGGGGUC-CUaCGAAC-GCUUC- -5'
8119 3' -55.3 NC_001978.2 + 37543 0.75 0.182571
Target:  5'- gGggGCGCaCCUGGGAaGCccGCGAAGg -3'
miRNA:   3'- aCuuCGCG-GGGUCCUaCGaaCGCUUC- -5'
8119 3' -55.3 NC_001978.2 + 25154 1.08 0.000639
Target:  5'- uUGAAGCGCCCCAGGAUGCUUGCGAAGu -3'
miRNA:   3'- -ACUUCGCGGGGUCCUACGAACGCUUC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.