miRNA display CGI


Results 1 - 8 of 8 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
812 5' -48.5 NC_000866.4 + 80003 1.13 0.010462
Target:  5'- uGAUACUACUGAACCGACAGAUCCUCCu -3'
miRNA:   3'- -CUAUGAUGACUUGGCUGUCUAGGAGG- -5'
812 5' -48.5 NC_000866.4 + 119187 0.74 0.907435
Target:  5'- uGAUACUGCUGAAuCUGugGG-UCCUUUa -3'
miRNA:   3'- -CUAUGAUGACUU-GGCugUCuAGGAGG- -5'
812 5' -48.5 NC_000866.4 + 20877 0.71 0.977282
Target:  5'- --gGCUguuGCUGGaagACCGGCAGAUUCUgCa -3'
miRNA:   3'- cuaUGA---UGACU---UGGCUGUCUAGGAgG- -5'
812 5' -48.5 NC_000866.4 + 50212 0.69 0.991542
Target:  5'- uGAUGauucacCUGAACCGAUAGAaauUCgUCCa -3'
miRNA:   3'- -CUAUgau---GACUUGGCUGUCU---AGgAGG- -5'
812 5' -48.5 NC_000866.4 + 111000 0.69 0.994179
Target:  5'- --aACUACUuuaauagucuuuuGACCGGCAGGUCCUUUu -3'
miRNA:   3'- cuaUGAUGAc------------UUGGCUGUCUAGGAGG- -5'
812 5' -48.5 NC_000866.4 + 128604 0.68 0.99711
Target:  5'- uAUGCUagaGCUcaGGACCGugGGAcCCUCUu -3'
miRNA:   3'- cUAUGA---UGA--CUUGGCugUCUaGGAGG- -5'
812 5' -48.5 NC_000866.4 + 85744 0.68 0.997301
Target:  5'- gGAUugcCUACUGAauauGCCGACAGAauagcuaaauuaaCUCCa -3'
miRNA:   3'- -CUAu--GAUGACU----UGGCUGUCUag-----------GAGG- -5'
812 5' -48.5 NC_000866.4 + 21081 0.67 0.998839
Target:  5'- cGAUAUUGCaGAAUCuGCcGGUCUUCCa -3'
miRNA:   3'- -CUAUGAUGaCUUGGcUGuCUAGGAGG- -5'
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.