miRNA display CGI


Results 1 - 20 of 23 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
8120 3' -56.7 NC_001978.2 + 4385 0.66 0.598663
Target:  5'- uGGGGCaggGGCGcCGUCGCUgcgacagaacgaCGUGUaCGCc -3'
miRNA:   3'- -CCUCGa--CUGCuGCAGCGG------------GCACA-GUG- -5'
8120 3' -56.7 NC_001978.2 + 35812 0.66 0.587701
Target:  5'- cGAGCUgggcGACGGCGUUGCCaagGgcuUCGCa -3'
miRNA:   3'- cCUCGA----CUGCUGCAGCGGg--Cac-AGUG- -5'
8120 3' -56.7 NC_001978.2 + 16148 0.66 0.565897
Target:  5'- gGGAGUUGcgucCGGCGUUGCCaCGcUGggCACc -3'
miRNA:   3'- -CCUCGACu---GCUGCAGCGG-GC-ACa-GUG- -5'
8120 3' -56.7 NC_001978.2 + 22101 0.66 0.555071
Target:  5'- cGGGgUGAguACGUCGgCCGUGUgCGCg -3'
miRNA:   3'- cCUCgACUgcUGCAGCgGGCACA-GUG- -5'
8120 3' -56.7 NC_001978.2 + 26038 0.66 0.555071
Target:  5'- -cGGCUGGgGAacUUGCCCGgGUCGCg -3'
miRNA:   3'- ccUCGACUgCUgcAGCGGGCaCAGUG- -5'
8120 3' -56.7 NC_001978.2 + 16117 0.66 0.555071
Target:  5'- aGAGUUGACGGa---GCCCGUacccggGUCACc -3'
miRNA:   3'- cCUCGACUGCUgcagCGGGCA------CAGUG- -5'
8120 3' -56.7 NC_001978.2 + 11517 0.66 0.555071
Target:  5'- cGAGCUuuacGCGACGUCGCCuuacauCGUGggcgaCGCu -3'
miRNA:   3'- cCUCGAc---UGCUGCAGCGG------GCACa----GUG- -5'
8120 3' -56.7 NC_001978.2 + 19526 0.66 0.552913
Target:  5'- cGGAGCUGAcCGGCGccgaccacaucaCGCCCGgguggacgGUgGCc -3'
miRNA:   3'- -CCUCGACU-GCUGCa-----------GCGGGCa-------CAgUG- -5'
8120 3' -56.7 NC_001978.2 + 351 0.67 0.522992
Target:  5'- cGAGCUucACGAcCGUCGCgCCGaccuguUGUCGCu -3'
miRNA:   3'- cCUCGAc-UGCU-GCAGCG-GGC------ACAGUG- -5'
8120 3' -56.7 NC_001978.2 + 31132 0.67 0.512455
Target:  5'- cGGAGCUGACcacgcACGUucCGCCCcggGUUGCc -3'
miRNA:   3'- -CCUCGACUGc----UGCA--GCGGGca-CAGUG- -5'
8120 3' -56.7 NC_001978.2 + 7203 0.67 0.491652
Target:  5'- cGGAGCcgguucgcuucUGACGGCGgCGUUCGacaagGUCACc -3'
miRNA:   3'- -CCUCG-----------ACUGCUGCaGCGGGCa----CAGUG- -5'
8120 3' -56.7 NC_001978.2 + 15659 0.68 0.441475
Target:  5'- uGGGGCUcGACGGCGacacguaCGCCCaguucacuGUGUCGa -3'
miRNA:   3'- -CCUCGA-CUGCUGCa------GCGGG--------CACAGUg -5'
8120 3' -56.7 NC_001978.2 + 19598 0.68 0.441475
Target:  5'- cGGGCgUGAUGugGUCGgcgccggucagcUCCGUGUCGa -3'
miRNA:   3'- cCUCG-ACUGCugCAGC------------GGGCACAGUg -5'
8120 3' -56.7 NC_001978.2 + 22878 0.69 0.422229
Target:  5'- cGGGGaC-GGCGGCGUUGUggCCGUGcCACa -3'
miRNA:   3'- -CCUC-GaCUGCUGCAGCG--GGCACaGUG- -5'
8120 3' -56.7 NC_001978.2 + 7961 0.69 0.403497
Target:  5'- cGGGCgucACGcCGUCGCCCGgGUCGa -3'
miRNA:   3'- cCUCGac-UGCuGCAGCGGGCaCAGUg -5'
8120 3' -56.7 NC_001978.2 + 27275 0.69 0.385299
Target:  5'- cGAGCgcaucgGACGUCGCCCGguacUCACg -3'
miRNA:   3'- cCUCGacug--CUGCAGCGGGCac--AGUG- -5'
8120 3' -56.7 NC_001978.2 + 30488 0.7 0.350568
Target:  5'- aGAGCccGACGGCGagauUCGCCCGaagGUCGg -3'
miRNA:   3'- cCUCGa-CUGCUGC----AGCGGGCa--CAGUg -5'
8120 3' -56.7 NC_001978.2 + 16006 0.73 0.24706
Target:  5'- cGAGUcGGCGccCGUcgCGCCCGUGUCGCc -3'
miRNA:   3'- cCUCGaCUGCu-GCA--GCGGGCACAGUG- -5'
8120 3' -56.7 NC_001978.2 + 17848 0.73 0.216739
Target:  5'- aGGAcGCUGACGGCGU-GCCgGgcgaaggGUCGCu -3'
miRNA:   3'- -CCU-CGACUGCUGCAgCGGgCa------CAGUG- -5'
8120 3' -56.7 NC_001978.2 + 13400 0.74 0.184614
Target:  5'- -cGGCUGACGACGUCGgggCGUGUCGu -3'
miRNA:   3'- ccUCGACUGCUGCAGCgg-GCACAGUg -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.