Results 1 - 19 of 19 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
8120 | 5' | -54.5 | NC_001978.2 | + | 36819 | 0.66 | 0.685792 |
Target: 5'- cCGGCGcGUCuGCCGAACgccCAGG-Ca -3' miRNA: 3'- -GCCGUaCAGuCGGCUUGgaaGUCCaG- -5' |
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8120 | 5' | -54.5 | NC_001978.2 | + | 3896 | 0.66 | 0.651914 |
Target: 5'- uCGGCuucUGUucgccgagaCGGCCGAcCgCUUCAGGUUc -3' miRNA: 3'- -GCCGu--ACA---------GUCGGCUuG-GAAGUCCAG- -5' |
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8120 | 5' | -54.5 | NC_001978.2 | + | 25113 | 0.66 | 0.640568 |
Target: 5'- aGGCA-GUCAGCgaaGAGCCggaCGGGg- -3' miRNA: 3'- gCCGUaCAGUCGg--CUUGGaa-GUCCag -5' |
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8120 | 5' | -54.5 | NC_001978.2 | + | 8529 | 0.67 | 0.569324 |
Target: 5'- uGGCGUcgaucucgucaaugGUCAG-CGAAUcaagCUUCAGGUCa -3' miRNA: 3'- gCCGUA--------------CAGUCgGCUUG----GAAGUCCAG- -5' |
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8120 | 5' | -54.5 | NC_001978.2 | + | 25071 | 0.67 | 0.583925 |
Target: 5'- cCGGCucaGUCGGCgggcuuCGGACCga-AGGUCa -3' miRNA: 3'- -GCCGua-CAGUCG------GCUUGGaagUCCAG- -5' |
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8120 | 5' | -54.5 | NC_001978.2 | + | 21353 | 0.67 | 0.594077 |
Target: 5'- uCGGUcgGUCacucgucuucgucGGCCGuAACCagcgcgcUCAGGUCa -3' miRNA: 3'- -GCCGuaCAG-------------UCGGC-UUGGa------AGUCCAG- -5' |
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8120 | 5' | -54.5 | NC_001978.2 | + | 665 | 0.67 | 0.60539 |
Target: 5'- aCGGCgcggGUGgccUCAGCCucagcgcgcuucaGcGCCUUCGGGUCc -3' miRNA: 3'- -GCCG----UAC---AGUCGG-------------CuUGGAAGUCCAG- -5' |
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8120 | 5' | -54.5 | NC_001978.2 | + | 36867 | 0.68 | 0.528332 |
Target: 5'- uGGCGUcacCGGCUGAACCcggUUgAGGUCg -3' miRNA: 3'- gCCGUAca-GUCGGCUUGG---AAgUCCAG- -5' |
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8120 | 5' | -54.5 | NC_001978.2 | + | 25809 | 0.68 | 0.517434 |
Target: 5'- uGGCcgaagGUCuGaaGGGCUUUCAGGUCa -3' miRNA: 3'- gCCGua---CAGuCggCUUGGAAGUCCAG- -5' |
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8120 | 5' | -54.5 | NC_001978.2 | + | 11421 | 0.68 | 0.549263 |
Target: 5'- cCGGCAUGaaAGCCGccugaagGGCgUUCAGGg- -3' miRNA: 3'- -GCCGUACagUCGGC-------UUGgAAGUCCag -5' |
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8120 | 5' | -54.5 | NC_001978.2 | + | 24211 | 0.68 | 0.550372 |
Target: 5'- -cGCcgGUCGGCUGAACCUgaAGGa- -3' miRNA: 3'- gcCGuaCAGUCGGCUUGGAagUCCag -5' |
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8120 | 5' | -54.5 | NC_001978.2 | + | 30513 | 0.69 | 0.495918 |
Target: 5'- -aGCGUGUCGGCaaggGAACCgUCGGcGUCc -3' miRNA: 3'- gcCGUACAGUCGg---CUUGGaAGUC-CAG- -5' |
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8120 | 5' | -54.5 | NC_001978.2 | + | 4580 | 0.69 | 0.453152 |
Target: 5'- aCGGuCGUGUCgggaGGUCGAucucauaccauccGCCUUCAcGGUCu -3' miRNA: 3'- -GCC-GUACAG----UCGGCU-------------UGGAAGU-CCAG- -5' |
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8120 | 5' | -54.5 | NC_001978.2 | + | 40869 | 0.69 | 0.454171 |
Target: 5'- gCGGCA-GUaCAGgCaAGCCUUCGGGUUg -3' miRNA: 3'- -GCCGUaCA-GUCgGcUUGGAAGUCCAG- -5' |
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8120 | 5' | -54.5 | NC_001978.2 | + | 13286 | 0.69 | 0.458261 |
Target: 5'- gCGGCAagGUCGGCCGucgugguccacagcaAGCCgccccagUCGGGUUc -3' miRNA: 3'- -GCCGUa-CAGUCGGC---------------UUGGa------AGUCCAG- -5' |
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8120 | 5' | -54.5 | NC_001978.2 | + | 26053 | 0.69 | 0.485312 |
Target: 5'- aCGGCGUcgugcaGUCGGCUgggGAACUUgccCGGGUCg -3' miRNA: 3'- -GCCGUA------CAGUCGG---CUUGGAa--GUCCAG- -5' |
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8120 | 5' | -54.5 | NC_001978.2 | + | 15810 | 0.71 | 0.383256 |
Target: 5'- gGGCAccccGUCGGCCGAcgugcccguuggugAcaugcuCCUUCGGGUCg -3' miRNA: 3'- gCCGUa---CAGUCGGCU--------------U------GGAAGUCCAG- -5' |
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8120 | 5' | -54.5 | NC_001978.2 | + | 10937 | 0.71 | 0.386023 |
Target: 5'- aCGGCucgacgGUcCGGCCGAACCaugcguugUCGGGUUc -3' miRNA: 3'- -GCCGua----CA-GUCGGCUUGGa-------AGUCCAG- -5' |
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8120 | 5' | -54.5 | NC_001978.2 | + | 25272 | 1.11 | 0.000548 |
Target: 5'- aCGGCAUGUCAGCCGAACCUUCAGGUCg -3' miRNA: 3'- -GCCGUACAGUCGGCUUGGAAGUCCAG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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