Results 1 - 20 of 32 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
8121 | 3' | -63.2 | NC_001978.2 | + | 20696 | 0.66 | 0.266531 |
Target: 5'- gCCUGGGCGUagaccucaGCGGcagcguucuucGUCGucuugcgcucCGCCGUCa -3' miRNA: 3'- gGGACCCGCGg-------UGCC-----------CAGU----------GCGGCAG- -5' |
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8121 | 3' | -63.2 | NC_001978.2 | + | 39413 | 0.66 | 0.300859 |
Target: 5'- aCCggccGGaGCGUgAuCGGGUCGCGCUGa- -3' miRNA: 3'- gGGa---CC-CGCGgU-GCCCAGUGCGGCag -5' |
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8121 | 3' | -63.2 | NC_001978.2 | + | 2639 | 0.66 | 0.300859 |
Target: 5'- gCCCgGGGCGCgcgcauCACGaaGGaacaCGCGUCGUCg -3' miRNA: 3'- -GGGaCCCGCG------GUGC--CCa---GUGCGGCAG- -5' |
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8121 | 3' | -63.2 | NC_001978.2 | + | 8817 | 0.66 | 0.269157 |
Target: 5'- gCCggucggGGGCGaaGCGGGggcacugagcgccgCACGcCCGUCa -3' miRNA: 3'- gGGa-----CCCGCggUGCCCa-------------GUGC-GGCAG- -5' |
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8121 | 3' | -63.2 | NC_001978.2 | + | 853 | 0.67 | 0.247496 |
Target: 5'- gCCUGGGCGCgcgacugggCACGGGgucugUACGguuaccggcUCGUCg -3' miRNA: 3'- gGGACCCGCG---------GUGCCCa----GUGC---------GGCAG- -5' |
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8121 | 3' | -63.2 | NC_001978.2 | + | 28047 | 0.67 | 0.229601 |
Target: 5'- gUCCUGGG-GCUgacGCGGGUCAaucaG-CGUCg -3' miRNA: 3'- -GGGACCCgCGG---UGCCCAGUg---CgGCAG- -5' |
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8121 | 3' | -63.2 | NC_001978.2 | + | 21328 | 0.67 | 0.247496 |
Target: 5'- cCCCUGGgacacGCGCC-CGGGggcuUCGC-CCGUa -3' miRNA: 3'- -GGGACC-----CGCGGuGCCC----AGUGcGGCAg -5' |
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8121 | 3' | -63.2 | NC_001978.2 | + | 36884 | 0.67 | 0.260058 |
Target: 5'- gCCUGGGCGUU-CGGcagaCGCGCCGg- -3' miRNA: 3'- gGGACCCGCGGuGCCca--GUGCGGCag -5' |
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8121 | 3' | -63.2 | NC_001978.2 | + | 36794 | 0.67 | 0.262631 |
Target: 5'- gCCUgGGGCGCCgucuccggcuccgugACGGGcUCAggcucCGCCGg- -3' miRNA: 3'- gGGA-CCCGCGG---------------UGCCC-AGU-----GCGGCag -5' |
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8121 | 3' | -63.2 | NC_001978.2 | + | 28119 | 0.67 | 0.234852 |
Target: 5'- gCCCUGaguguccGGCGCCgACGGGUCgACGUa--- -3' miRNA: 3'- -GGGAC-------CCGCGG-UGCCCAG-UGCGgcag -5' |
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8121 | 3' | -63.2 | NC_001978.2 | + | 26089 | 0.68 | 0.207453 |
Target: 5'- aCCUGGGCacgGUCgcggACGGGUCGaGCCGa- -3' miRNA: 3'- gGGACCCG---CGG----UGCCCAGUgCGGCag -5' |
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8121 | 3' | -63.2 | NC_001978.2 | + | 7991 | 0.68 | 0.217734 |
Target: 5'- uUCC-GGGCucgacguacgugaGCUugauuGCGGGcgUCACGCCGUCg -3' miRNA: 3'- -GGGaCCCG-------------CGG-----UGCCC--AGUGCGGCAG- -5' |
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8121 | 3' | -63.2 | NC_001978.2 | + | 26036 | 0.68 | 0.223318 |
Target: 5'- -gCUGGGgaacuUGCC-CGGGUCGCGCUcacgccaGUCa -3' miRNA: 3'- ggGACCC-----GCGGuGCCCAGUGCGG-------CAG- -5' |
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8121 | 3' | -63.2 | NC_001978.2 | + | 19722 | 0.68 | 0.223883 |
Target: 5'- gCCUUGucgaaGGCGUCcuugcGCGGGUCGCugaccuugucGCCGUCc -3' miRNA: 3'- -GGGAC-----CCGCGG-----UGCCCAGUG----------CGGCAG- -5' |
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8121 | 3' | -63.2 | NC_001978.2 | + | 102 | 0.68 | 0.205868 |
Target: 5'- gCCUgggGGGCGCC-UGGGUCcggcggcucaccuaGCGCgCGUUu -3' miRNA: 3'- -GGGa--CCCGCGGuGCCCAG--------------UGCG-GCAG- -5' |
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8121 | 3' | -63.2 | NC_001978.2 | + | 2981 | 0.68 | 0.202212 |
Target: 5'- aCCUGGGCGCCguucggcuuccgGCGagacGGUCACuCCG-Ca -3' miRNA: 3'- gGGACCCGCGG------------UGC----CCAGUGcGGCaG- -5' |
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8121 | 3' | -63.2 | NC_001978.2 | + | 21197 | 0.68 | 0.201178 |
Target: 5'- aCCUGGGCGCgaaucaccuucaGCGcGUCG-GCCGUCu -3' miRNA: 3'- gGGACCCGCGg-----------UGCcCAGUgCGGCAG- -5' |
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8121 | 3' | -63.2 | NC_001978.2 | + | 30998 | 0.68 | 0.207453 |
Target: 5'- aCCUGGGCGCaCAUGccuuccauGUCGCacCCGUCa -3' miRNA: 3'- gGGACCCGCG-GUGCc-------CAGUGc-GGCAG- -5' |
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8121 | 3' | -63.2 | NC_001978.2 | + | 4354 | 0.69 | 0.184288 |
Target: 5'- aCCUGGGCGgCuucCGGGaacgcaUCguuccuggggcagggGCGCCGUCg -3' miRNA: 3'- gGGACCCGCgGu--GCCC------AG---------------UGCGGCAG- -5' |
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8121 | 3' | -63.2 | NC_001978.2 | + | 25648 | 0.7 | 0.151408 |
Target: 5'- gCgCUGGGCGCCGUauggcguguuccgGGGUgACGCCGg- -3' miRNA: 3'- -GgGACCCGCGGUG-------------CCCAgUGCGGCag -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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