miRNA display CGI


Results 21 - 32 of 32 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
8121 3' -63.2 NC_001978.2 + 25648 0.7 0.151408
Target:  5'- gCgCUGGGCGCCGUauggcguguuccgGGGUgACGCCGg- -3'
miRNA:   3'- -GgGACCCGCGGUG-------------CCCAgUGCGGCag -5'
8121 3' -63.2 NC_001978.2 + 9796 0.71 0.136498
Target:  5'- gCCUGGGUGCCGaagaGcGUCACaGCgGUCg -3'
miRNA:   3'- gGGACCCGCGGUg---CcCAGUG-CGgCAG- -5'
8121 3' -63.2 NC_001978.2 + 11037 0.71 0.129386
Target:  5'- gCCUGGGCGCUGCGGacGUCucCGgCGUg -3'
miRNA:   3'- gGGACCCGCGGUGCC--CAGu-GCgGCAg -5'
8121 3' -63.2 NC_001978.2 + 19601 0.71 0.122617
Target:  5'- aCCC-GGGCGUgAUGuGGUCGgCGCCGgUCa -3'
miRNA:   3'- -GGGaCCCGCGgUGC-CCAGU-GCGGC-AG- -5'
8121 3' -63.2 NC_001978.2 + 17756 0.71 0.116179
Target:  5'- aCCUGGGCGCCACGuGcCccguaGCCGUa -3'
miRNA:   3'- gGGACCCGCGGUGCcCaGug---CGGCAg -5'
8121 3' -63.2 NC_001978.2 + 37760 0.72 0.113079
Target:  5'- aCCCagGGGCGCacgacggGCGGGU--UGCCGUCu -3'
miRNA:   3'- -GGGa-CCCGCGg------UGCCCAguGCGGCAG- -5'
8121 3' -63.2 NC_001978.2 + 9432 0.72 0.107111
Target:  5'- uUCCUGGGCGCCACGaacgagaauGUCaaACGCuuCGUCg -3'
miRNA:   3'- -GGGACCCGCGGUGCc--------CAG--UGCG--GCAG- -5'
8121 3' -63.2 NC_001978.2 + 37862 0.73 0.090438
Target:  5'- gCCUGGGCGCCAugcUGGGUgacccauucgagcggCAugaggguugagggguCGCCGUCg -3'
miRNA:   3'- gGGACCCGCGGU---GCCCA---------------GU---------------GCGGCAG- -5'
8121 3' -63.2 NC_001978.2 + 40548 0.74 0.079253
Target:  5'- ---aGGGCGCC-CGGGUgACGCUGUg -3'
miRNA:   3'- gggaCCCGCGGuGCCCAgUGCGGCAg -5'
8121 3' -63.2 NC_001978.2 + 16748 0.74 0.070955
Target:  5'- gCCUGGGCGCUACuGGGUgACGUgGcuUCa -3'
miRNA:   3'- gGGACCCGCGGUG-CCCAgUGCGgC--AG- -5'
8121 3' -63.2 NC_001978.2 + 37119 0.77 0.046686
Target:  5'- aCCCUGGGCGCCAUGGGaCcgaagacgcaaGCGgCGUa -3'
miRNA:   3'- -GGGACCCGCGGUGCCCaG-----------UGCgGCAg -5'
8121 3' -63.2 NC_001978.2 + 25628 1.11 0.000102
Target:  5'- cCCCUGGGCGCCACGGGUCACGCCGUCg -3'
miRNA:   3'- -GGGACCCGCGGUGCCCAGUGCGGCAG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.