Results 1 - 16 of 16 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
8121 | 5' | -56.2 | NC_001978.2 | + | 25594 | 1.09 | 0.000559 |
Target: 5'- uUCAGCGGAACGACCAUGCGCGGGAACc -3' miRNA: 3'- -AGUCGCCUUGCUGGUACGCGCCCUUG- -5' |
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8121 | 5' | -56.2 | NC_001978.2 | + | 5186 | 0.74 | 0.204857 |
Target: 5'- gUCGGCGGAACG-CUGaGCGCcGGAGCc -3' miRNA: 3'- -AGUCGCCUUGCuGGUaCGCGcCCUUG- -5' |
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8121 | 5' | -56.2 | NC_001978.2 | + | 6901 | 0.73 | 0.216196 |
Target: 5'- aCAGCGcucuAACGGuCCGUGUGCGGGuGCg -3' miRNA: 3'- aGUCGCc---UUGCU-GGUACGCGCCCuUG- -5' |
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8121 | 5' | -56.2 | NC_001978.2 | + | 30390 | 0.72 | 0.267015 |
Target: 5'- uUCGGCGGGAUGAUCuGUGCGagcCGGGcGGCu -3' miRNA: 3'- -AGUCGCCUUGCUGG-UACGC---GCCC-UUG- -5' |
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8121 | 5' | -56.2 | NC_001978.2 | + | 8016 | 0.72 | 0.281144 |
Target: 5'- uUCAGCGGAACGugCGcGCGCuccgcgacaaGGAAUu -3' miRNA: 3'- -AGUCGCCUUGCugGUaCGCGc---------CCUUG- -5' |
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8121 | 5' | -56.2 | NC_001978.2 | + | 3226 | 0.7 | 0.343565 |
Target: 5'- uUCAGgGGAACGcguuccuuGCCGUGCGCuGGcaggguccGAACa -3' miRNA: 3'- -AGUCgCCUUGC--------UGGUACGCG-CC--------CUUG- -5' |
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8121 | 5' | -56.2 | NC_001978.2 | + | 5293 | 0.7 | 0.343565 |
Target: 5'- -gAGCGuuccGCGAUCAUGCGCGGuGGCg -3' miRNA: 3'- agUCGCcu--UGCUGGUACGCGCCcUUG- -5' |
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8121 | 5' | -56.2 | NC_001978.2 | + | 40377 | 0.68 | 0.454547 |
Target: 5'- aCAGCGGGGCGAgCCGUugaccUGgGGGAAg -3' miRNA: 3'- aGUCGCCUUGCU-GGUAc----GCgCCCUUg -5' |
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8121 | 5' | -56.2 | NC_001978.2 | + | 28025 | 0.68 | 0.461609 |
Target: 5'- aUCAGCGucgccuuaaucuucGuguCGACCGUGCGCGGu-GCu -3' miRNA: 3'- -AGUCGC--------------Cuu-GCUGGUACGCGCCcuUG- -5' |
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8121 | 5' | -56.2 | NC_001978.2 | + | 11114 | 0.67 | 0.485207 |
Target: 5'- -uGGCGGAguugaGCGACuggaCAUGCGaguauCGGGGGCu -3' miRNA: 3'- agUCGCCU-----UGCUG----GUACGC-----GCCCUUG- -5' |
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8121 | 5' | -56.2 | NC_001978.2 | + | 19418 | 0.67 | 0.492503 |
Target: 5'- -aGGCGGAGCGcgaagagcgccugaACCGUgacccGCGCGGuGACg -3' miRNA: 3'- agUCGCCUUGC--------------UGGUA-----CGCGCCcUUG- -5' |
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8121 | 5' | -56.2 | NC_001978.2 | + | 35121 | 0.67 | 0.506185 |
Target: 5'- cCAGgaCGGAGCaaggaaGCCAcGCGCGGGcAGCa -3' miRNA: 3'- aGUC--GCCUUGc-----UGGUaCGCGCCC-UUG- -5' |
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8121 | 5' | -56.2 | NC_001978.2 | + | 13891 | 0.66 | 0.549225 |
Target: 5'- gUCAGCgucGGAAUGGCCAcggGUGCGGc--- -3' miRNA: 3'- -AGUCG---CCUUGCUGGUa--CGCGCCcuug -5' |
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8121 | 5' | -56.2 | NC_001978.2 | + | 37866 | 0.66 | 0.592223 |
Target: 5'- gUCGGCgGGGGCG-CCGUcccguacaacgucGCGCGuGAGCg -3' miRNA: 3'- -AGUCG-CCUUGCuGGUA-------------CGCGCcCUUG- -5' |
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8121 | 5' | -56.2 | NC_001978.2 | + | 1704 | 0.66 | 0.604468 |
Target: 5'- --cGCGGAGucgaaGACCAUGCGCGccuGAuuGCg -3' miRNA: 3'- aguCGCCUUg----CUGGUACGCGCc--CU--UG- -5' |
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8121 | 5' | -56.2 | NC_001978.2 | + | 40674 | 0.66 | 0.604468 |
Target: 5'- aUCAGgGGAGUGACCGgccUGaGUGGGuAGCg -3' miRNA: 3'- -AGUCgCCUUGCUGGU---ACgCGCCC-UUG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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