miRNA display CGI


Results 1 - 20 of 36 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
8122 3' -54.7 NC_001978.2 + 1810 0.68 0.534489
Target:  5'- cGGCGUCc--GCCGACaCGAccCGGUAa -3'
miRNA:   3'- -CCGCAGuauCGGCUG-GCUauGCCGUc -5'
8122 3' -54.7 NC_001978.2 + 2557 0.66 0.689863
Target:  5'- cGCGUgcCGUgacGGUCGACUGAgccacgACGGCAa -3'
miRNA:   3'- cCGCA--GUA---UCGGCUGGCUa-----UGCCGUc -5'
8122 3' -54.7 NC_001978.2 + 2629 0.68 0.534489
Target:  5'- -cCGUCGUGGCucaguCGACCGucACGGCAc -3'
miRNA:   3'- ccGCAGUAUCG-----GCUGGCuaUGCCGUc -5'
8122 3' -54.7 NC_001978.2 + 5606 0.69 0.523698
Target:  5'- uGGCGUCAccgaUGGCCGgACCGGcguCGG-AGa -3'
miRNA:   3'- -CCGCAGU----AUCGGC-UGGCUau-GCCgUC- -5'
8122 3' -54.7 NC_001978.2 + 5705 0.67 0.645332
Target:  5'- cGGCGUC--AGCCucACCGAa--GGCAGc -3'
miRNA:   3'- -CCGCAGuaUCGGc-UGGCUaugCCGUC- -5'
8122 3' -54.7 NC_001978.2 + 7960 0.68 0.56069
Target:  5'- gGGCGUCAc-GCCGucgcCCGGgucgagcacacggaACGGCAGa -3'
miRNA:   3'- -CCGCAGUauCGGCu---GGCUa-------------UGCCGUC- -5'
8122 3' -54.7 NC_001978.2 + 11415 0.68 0.545357
Target:  5'- gGGCG-CAgcGuCCGACCGA-ACGGCc- -3'
miRNA:   3'- -CCGCaGUauC-GGCUGGCUaUGCCGuc -5'
8122 3' -54.7 NC_001978.2 + 12019 0.68 0.556296
Target:  5'- cGCGUCucagcuuGCCGACUGGcaggugaucgcUACGGCGc -3'
miRNA:   3'- cCGCAGuau----CGGCUGGCU-----------AUGCCGUc -5'
8122 3' -54.7 NC_001978.2 + 12408 0.66 0.677678
Target:  5'- cGCGUUGUccGGCCGugUcgggaccgucggcGAaGCGGCAGg -3'
miRNA:   3'- cCGCAGUA--UCGGCugG-------------CUaUGCCGUC- -5'
8122 3' -54.7 NC_001978.2 + 12577 0.73 0.289949
Target:  5'- aGCGUgA-AGCCGACCGGgaacgccgacgagACGGCAGc -3'
miRNA:   3'- cCGCAgUaUCGGCUGGCUa------------UGCCGUC- -5'
8122 3' -54.7 NC_001978.2 + 13888 0.7 0.471133
Target:  5'- aGCGUCGgaaUGGCC-ACgGGUGCGGCu- -3'
miRNA:   3'- cCGCAGU---AUCGGcUGgCUAUGCCGuc -5'
8122 3' -54.7 NC_001978.2 + 14222 0.66 0.678788
Target:  5'- cGCGcCcgAUAGCCGACCacucgacCGGCGGg -3'
miRNA:   3'- cCGCaG--UAUCGGCUGGcuau---GCCGUC- -5'
8122 3' -54.7 NC_001978.2 + 14559 0.69 0.523698
Target:  5'- cGGCGUCG-GGCCuuCCGGUaACGGUg- -3'
miRNA:   3'- -CCGCAGUaUCGGcuGGCUA-UGCCGuc -5'
8122 3' -54.7 NC_001978.2 + 16562 0.82 0.075068
Target:  5'- cGGCGUUucGGCUGACCGAUucAUGGCGGg -3'
miRNA:   3'- -CCGCAGuaUCGGCUGGCUA--UGCCGUC- -5'
8122 3' -54.7 NC_001978.2 + 18275 0.68 0.593907
Target:  5'- gGGCGcCAUGGgCGACCacagcaagccggGCGGCAa -3'
miRNA:   3'- -CCGCaGUAUCgGCUGGcua---------UGCCGUc -5'
8122 3' -54.7 NC_001978.2 + 18618 0.66 0.678788
Target:  5'- cGCGUCGcauucGCUGACCcguugaagGCGGCAGc -3'
miRNA:   3'- cCGCAGUau---CGGCUGGcua-----UGCCGUC- -5'
8122 3' -54.7 NC_001978.2 + 19311 0.69 0.481441
Target:  5'- cGGCuUCAUGGCUuccCCGGcgUGCGGCGGc -3'
miRNA:   3'- -CCGcAGUAUCGGcu-GGCU--AUGCCGUC- -5'
8122 3' -54.7 NC_001978.2 + 20471 0.66 0.656511
Target:  5'- cGGCGaCGUcGGCCGACCGGcGCGa--- -3'
miRNA:   3'- -CCGCaGUA-UCGGCUGGCUaUGCcguc -5'
8122 3' -54.7 NC_001978.2 + 22924 0.67 0.600594
Target:  5'- aGCGaCGUcAGaCCGACCGcGUACaGGCAGu -3'
miRNA:   3'- cCGCaGUA-UC-GGCUGGC-UAUG-CCGUC- -5'
8122 3' -54.7 NC_001978.2 + 24578 0.74 0.25747
Target:  5'- cGGCGUCAUGGUCGGCauauGUGuCGGCGu -3'
miRNA:   3'- -CCGCAGUAUCGGCUGgc--UAU-GCCGUc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.