miRNA display CGI


Results 21 - 36 of 36 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
8122 3' -54.7 NC_001978.2 + 5606 0.69 0.523698
Target:  5'- uGGCGUCAccgaUGGCCGgACCGGcguCGG-AGa -3'
miRNA:   3'- -CCGCAGU----AUCGGC-UGGCUau-GCCgUC- -5'
8122 3' -54.7 NC_001978.2 + 14559 0.69 0.523698
Target:  5'- cGGCGUCG-GGCCuuCCGGUaACGGUg- -3'
miRNA:   3'- -CCGCAGUaUCGGcuGGCUA-UGCCGuc -5'
8122 3' -54.7 NC_001978.2 + 32131 0.69 0.488721
Target:  5'- cGCGUCAgcuugccgcauggcUgaacgaggaAGCCGACCGggGCGGaCGGg -3'
miRNA:   3'- cCGCAGU--------------A---------UCGGCUGGCuaUGCC-GUC- -5'
8122 3' -54.7 NC_001978.2 + 19311 0.69 0.481441
Target:  5'- cGGCuUCAUGGCUuccCCGGcgUGCGGCGGc -3'
miRNA:   3'- -CCGcAGUAUCGGcu-GGCU--AUGCCGUC- -5'
8122 3' -54.7 NC_001978.2 + 13888 0.7 0.471133
Target:  5'- aGCGUCGgaaUGGCC-ACgGGUGCGGCu- -3'
miRNA:   3'- cCGCAGU---AUCGGcUGgCUAUGCCGuc -5'
8122 3' -54.7 NC_001978.2 + 25462 0.7 0.460939
Target:  5'- cGGCGgCGUAGUCGGCgGcAUccugggugaGCGGCAGc -3'
miRNA:   3'- -CCGCaGUAUCGGCUGgC-UA---------UGCCGUC- -5'
8122 3' -54.7 NC_001978.2 + 26600 0.72 0.340347
Target:  5'- gGGCGUUcgGGUCGuACuCGAU-CGGCAGc -3'
miRNA:   3'- -CCGCAGuaUCGGC-UG-GCUAuGCCGUC- -5'
8122 3' -54.7 NC_001978.2 + 32713 0.73 0.315963
Target:  5'- gGGCGUCAgcgucAGUCGGCCGGUcccgguuguaGGCAGc -3'
miRNA:   3'- -CCGCAGUa----UCGGCUGGCUAug--------CCGUC- -5'
8122 3' -54.7 NC_001978.2 + 12577 0.73 0.289949
Target:  5'- aGCGUgA-AGCCGACCGGgaacgccgacgagACGGCAGc -3'
miRNA:   3'- cCGCAgUaUCGGCUGGCUa------------UGCCGUC- -5'
8122 3' -54.7 NC_001978.2 + 27542 0.73 0.285537
Target:  5'- aGGUGUCAguccuuGCCGAagauccgggaCCGGUagcgGCGGCAGg -3'
miRNA:   3'- -CCGCAGUau----CGGCU----------GGCUA----UGCCGUC- -5'
8122 3' -54.7 NC_001978.2 + 35852 0.73 0.285537
Target:  5'- cGGCGUCAgugAGCgGACCcuucGAacCGGCGGg -3'
miRNA:   3'- -CCGCAGUa--UCGgCUGG----CUauGCCGUC- -5'
8122 3' -54.7 NC_001978.2 + 24578 0.74 0.25747
Target:  5'- cGGCGUCAUGGUCGGCauauGUGuCGGCGu -3'
miRNA:   3'- -CCGCAGUAUCGGCUGgc--UAU-GCCGUc -5'
8122 3' -54.7 NC_001978.2 + 32164 0.75 0.237932
Target:  5'- cGGgGUCAUcacggcacGGUCGGCCGGaACGGCAa -3'
miRNA:   3'- -CCgCAGUA--------UCGGCUGGCUaUGCCGUc -5'
8122 3' -54.7 NC_001978.2 + 36967 0.75 0.237932
Target:  5'- cGGUGgCAggguGCCGACCGGcaGCGGCAGc -3'
miRNA:   3'- -CCGCaGUau--CGGCUGGCUa-UGCCGUC- -5'
8122 3' -54.7 NC_001978.2 + 16562 0.82 0.075068
Target:  5'- cGGCGUUucGGCUGACCGAUucAUGGCGGg -3'
miRNA:   3'- -CCGCAGuaUCGGCUGGCUA--UGCCGUC- -5'
8122 3' -54.7 NC_001978.2 + 25797 1.11 0.000657
Target:  5'- cGGCGUCAUAGCCGACCGAUACGGCAGu -3'
miRNA:   3'- -CCGCAGUAUCGGCUGGCUAUGCCGUC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.