miRNA display CGI


Results 1 - 11 of 11 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
8123 5' -55.7 NC_001978.2 + 4599 0.66 0.638777
Target:  5'- cUCAGCgacgUCGCGACCAACggucgugUCGGGa--- -3'
miRNA:   3'- -GGUCGa---GGCGCUGGUUG-------AGUCCcaac -5'
8123 5' -55.7 NC_001978.2 + 17693 0.66 0.628723
Target:  5'- aCGGCUCCG-GA-CGGCUCAGcGGg-- -3'
miRNA:   3'- gGUCGAGGCgCUgGUUGAGUC-CCaac -5'
8123 5' -55.7 NC_001978.2 + 35748 0.66 0.610862
Target:  5'- uCCGGCUCCGUacggggcuucgaguGCCGACcggucuUCGGGGUc- -3'
miRNA:   3'- -GGUCGAGGCGc-------------UGGUUG------AGUCCCAac -5'
8123 5' -55.7 NC_001978.2 + 16299 0.66 0.584173
Target:  5'- cCCGGCUUCGUguuGACCGACgUCAcGGcGUUc -3'
miRNA:   3'- -GGUCGAGGCG---CUGGUUG-AGU-CC-CAAc -5'
8123 5' -55.7 NC_001978.2 + 15099 0.67 0.562108
Target:  5'- -gAGCUUCGCGACCAcauugacaACUUgauuGGGGg-- -3'
miRNA:   3'- ggUCGAGGCGCUGGU--------UGAG----UCCCaac -5'
8123 5' -55.7 NC_001978.2 + 31501 0.67 0.562108
Target:  5'- aCCGGCggcuUCCGCGugCAcGCUUucgcgucccGGGUUGc -3'
miRNA:   3'- -GGUCG----AGGCGCugGU-UGAGu--------CCCAAC- -5'
8123 5' -55.7 NC_001978.2 + 19095 0.67 0.551158
Target:  5'- uUCGGCccCCGcCGACUGACcuUCAcGGGUUGg -3'
miRNA:   3'- -GGUCGa-GGC-GCUGGUUG--AGU-CCCAAC- -5'
8123 5' -55.7 NC_001978.2 + 34605 0.76 0.159637
Target:  5'- -aAGCUCCGCGACCGACUgAacgcccagcuugccGGGUUc -3'
miRNA:   3'- ggUCGAGGCGCUGGUUGAgU--------------CCCAAc -5'
8123 5' -55.7 NC_001978.2 + 36779 0.82 0.066179
Target:  5'- uCCGGCUCCGUGACgGGCUCAGGc--- -3'
miRNA:   3'- -GGUCGAGGCGCUGgUUGAGUCCcaac -5'
8123 5' -55.7 NC_001978.2 + 36746 0.89 0.020733
Target:  5'- aCCGGCucagguUCCGCGACCGGCUCAGGGg-- -3'
miRNA:   3'- -GGUCG------AGGCGCUGGUUGAGUCCCaac -5'
8123 5' -55.7 NC_001978.2 + 25852 1.1 0.0006
Target:  5'- gCCAGCUCCGCGACCAACUCAGGGUUGu -3'
miRNA:   3'- -GGUCGAGGCGCUGGUUGAGUCCCAAC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.