Results 1 - 14 of 14 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
8124 | 3' | -52.4 | NC_001978.2 | + | 26212 | 1.1 | 0.001453 |
Target: 5'- uCACUCUCGCCGUACGUCGACACAAGGu -3' miRNA: 3'- -GUGAGAGCGGCAUGCAGCUGUGUUCC- -5' |
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8124 | 3' | -52.4 | NC_001978.2 | + | 6902 | 0.69 | 0.649259 |
Target: 5'- gACUC-CgGCCGUACGUcCaugagccccgggaccGACACAAGGu -3' miRNA: 3'- gUGAGaG-CGGCAUGCA-G---------------CUGUGUUCC- -5' |
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8124 | 3' | -52.4 | NC_001978.2 | + | 26059 | 0.69 | 0.678493 |
Target: 5'- gACUUgacggCGUCGUGCaGUCGGCugGGGa -3' miRNA: 3'- gUGAGa----GCGGCAUG-CAGCUGugUUCc -5' |
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8124 | 3' | -52.4 | NC_001978.2 | + | 20182 | 0.68 | 0.689665 |
Target: 5'- aCGCUCagaucagCGCCGUucacgggcACGUCGACAacauCAAGa -3' miRNA: 3'- -GUGAGa------GCGGCA--------UGCAGCUGU----GUUCc -5' |
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8124 | 3' | -52.4 | NC_001978.2 | + | 28305 | 0.67 | 0.744407 |
Target: 5'- gGCUCgCGCUugaucuugaGUACGUCGACACc--- -3' miRNA: 3'- gUGAGaGCGG---------CAUGCAGCUGUGuucc -5' |
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8124 | 3' | -52.4 | NC_001978.2 | + | 16180 | 0.67 | 0.744407 |
Target: 5'- aACgggaaUCGCCccgACGUCGGCagcgGCAAGGg -3' miRNA: 3'- gUGag---AGCGGca-UGCAGCUG----UGUUCC- -5' |
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8124 | 3' | -52.4 | NC_001978.2 | + | 18897 | 0.67 | 0.755046 |
Target: 5'- gCGCUC-CGCa--GCGUCGAUAgCGGGGa -3' miRNA: 3'- -GUGAGaGCGgcaUGCAGCUGU-GUUCC- -5' |
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8124 | 3' | -52.4 | NC_001978.2 | + | 2155 | 0.67 | 0.755046 |
Target: 5'- -gUUCgugCGCgGUGCGUCGACAU--GGu -3' miRNA: 3'- guGAGa--GCGgCAUGCAGCUGUGuuCC- -5' |
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8124 | 3' | -52.4 | NC_001978.2 | + | 30731 | 0.67 | 0.765554 |
Target: 5'- uCACgC-CGCCGUgucgACGUCGACcgAAGGg -3' miRNA: 3'- -GUGaGaGCGGCA----UGCAGCUGugUUCC- -5' |
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8124 | 3' | -52.4 | NC_001978.2 | + | 39162 | 0.67 | 0.786123 |
Target: 5'- aCGCUgaCGCCGUGC--CGACcCGGGGc -3' miRNA: 3'- -GUGAgaGCGGCAUGcaGCUGuGUUCC- -5' |
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8124 | 3' | -52.4 | NC_001978.2 | + | 32888 | 0.67 | 0.786123 |
Target: 5'- aGCUCcgucagaagCGCaCGcgagACGUCGcGCACAAGGa -3' miRNA: 3'- gUGAGa--------GCG-GCa---UGCAGC-UGUGUUCC- -5' |
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8124 | 3' | -52.4 | NC_001978.2 | + | 30533 | 0.66 | 0.815684 |
Target: 5'- gGCUCuUCGUCGUAgugcuuagcgUGUCGGCA-AGGGa -3' miRNA: 3'- gUGAG-AGCGGCAU----------GCAGCUGUgUUCC- -5' |
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8124 | 3' | -52.4 | NC_001978.2 | + | 38103 | 0.66 | 0.815684 |
Target: 5'- uCACcggCUCGCCGU-CGUCGuCcUggGGc -3' miRNA: 3'- -GUGa--GAGCGGCAuGCAGCuGuGuuCC- -5' |
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8124 | 3' | -52.4 | NC_001978.2 | + | 32358 | 0.66 | 0.834396 |
Target: 5'- aGCgUC-CGCCGaACGgcUCGACGCAuGGa -3' miRNA: 3'- gUG-AGaGCGGCaUGC--AGCUGUGUuCC- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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