Results 1 - 11 of 11 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
8124 | 5' | -62.2 | NC_001978.2 | + | 26174 | 1.06 | 0.000216 |
Target: 5'- gCGCGCAGCGUCGGCGCCCUGAGUGCUc -3' miRNA: 3'- -GCGCGUCGCAGCCGCGGGACUCACGA- -5' |
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8124 | 5' | -62.2 | NC_001978.2 | + | 24969 | 0.87 | 0.007455 |
Target: 5'- uGCGCAGCGUCGGCGCCCcccuugcucagcGGGUGCa -3' miRNA: 3'- gCGCGUCGCAGCCGCGGGa-----------CUCACGa -5' |
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8124 | 5' | -62.2 | NC_001978.2 | + | 18167 | 0.69 | 0.177302 |
Target: 5'- cCGU-CAGCGUCGGCGCCg-GAGUaaccGCg -3' miRNA: 3'- -GCGcGUCGCAGCCGCGGgaCUCA----CGa -5' |
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8124 | 5' | -62.2 | NC_001978.2 | + | 24442 | 0.69 | 0.177302 |
Target: 5'- gGCGCAGCGUCGG-GCCCgaUGAa---- -3' miRNA: 3'- gCGCGUCGCAGCCgCGGG--ACUcacga -5' |
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8124 | 5' | -62.2 | NC_001978.2 | + | 29862 | 0.68 | 0.207621 |
Target: 5'- uGCGCaaAGCGggGGCGaCCCUuccGGGUGCc -3' miRNA: 3'- gCGCG--UCGCagCCGC-GGGA---CUCACGa -5' |
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8124 | 5' | -62.2 | NC_001978.2 | + | 20239 | 0.67 | 0.247918 |
Target: 5'- gGCGCugaucugAGCGUCaaCGUCCUGGGUGUc -3' miRNA: 3'- gCGCG-------UCGCAGccGCGGGACUCACGa -5' |
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8124 | 5' | -62.2 | NC_001978.2 | + | 14566 | 0.67 | 0.25491 |
Target: 5'- gCGCGUccGGCGUCGG-GCCUUccgguaacGGUGCUg -3' miRNA: 3'- -GCGCG--UCGCAGCCgCGGGAc-------UCACGA- -5' |
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8124 | 5' | -62.2 | NC_001978.2 | + | 30430 | 0.66 | 0.274803 |
Target: 5'- cCGgGCGGCuUCGGCGCguuccuugCUGAGUcGCUu -3' miRNA: 3'- -GCgCGUCGcAGCCGCGg-------GACUCA-CGA- -5' |
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8124 | 5' | -62.2 | NC_001978.2 | + | 4452 | 0.66 | 0.29592 |
Target: 5'- uGuCGCAGCGaCGGCGCCCc---UGCc -3' miRNA: 3'- gC-GCGUCGCaGCCGCGGGacucACGa -5' |
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8124 | 5' | -62.2 | NC_001978.2 | + | 215 | 0.66 | 0.29592 |
Target: 5'- uCGUGUacgAGgGUCGaGCGCCCcGuGUGCc -3' miRNA: 3'- -GCGCG---UCgCAGC-CGCGGGaCuCACGa -5' |
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8124 | 5' | -62.2 | NC_001978.2 | + | 25641 | 0.66 | 0.310686 |
Target: 5'- aCGgGCAGCGcUgGGCGCCguaUGGcGUGUUc -3' miRNA: 3'- -GCgCGUCGC-AgCCGCGGg--ACU-CACGA- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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