miRNA display CGI


Results 1 - 18 of 18 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
8125 3' -52.1 NC_001978.2 + 3092 0.66 0.813821
Target:  5'- -cGAACACUGCcgacaccuGAAGCg-CGUCAUGc -3'
miRNA:   3'- ccCUUGUGACG--------CUUCGagGCAGUACu -5'
8125 3' -52.1 NC_001978.2 + 18842 0.66 0.781644
Target:  5'- --cGACGCUGCGGAGCgccugagccugcCCGUCGUc- -3'
miRNA:   3'- cccUUGUGACGCUUCGa-----------GGCAGUAcu -5'
8125 3' -52.1 NC_001978.2 + 35277 0.67 0.773315
Target:  5'- -uGAGCuugUGCGcGGCUCCGUCAucUGGa -3'
miRNA:   3'- ccCUUGug-ACGCuUCGAGGCAGU--ACU- -5'
8125 3' -52.1 NC_001978.2 + 17947 0.67 0.773315
Target:  5'- cGGGAAgcUUGCcgaGAAGCUUCGUCAg-- -3'
miRNA:   3'- -CCCUUguGACG---CUUCGAGGCAGUacu -5'
8125 3' -52.1 NC_001978.2 + 41023 0.67 0.730286
Target:  5'- cGGcAGCGCUagaaGCGAccGC-CCGUCAUGAa -3'
miRNA:   3'- cCC-UUGUGA----CGCUu-CGaGGCAGUACU- -5'
8125 3' -52.1 NC_001978.2 + 6215 0.68 0.71923
Target:  5'- -cGAGCGC-GCGAAGCUCUucaaUCGUGGc -3'
miRNA:   3'- ccCUUGUGaCGCUUCGAGGc---AGUACU- -5'
8125 3' -52.1 NC_001978.2 + 41186 0.68 0.708081
Target:  5'- uGGGAacaACGCUGCGgcGaagaUgCGUCGUGc -3'
miRNA:   3'- -CCCU---UGUGACGCuuCg---AgGCAGUACu -5'
8125 3' -52.1 NC_001978.2 + 25234 0.68 0.706962
Target:  5'- cGGuuguGACACggGCGAcgucgucAGCUCCGUCGgccUGAa -3'
miRNA:   3'- cCC----UUGUGa-CGCU-------UCGAGGCAGU---ACU- -5'
8125 3' -52.1 NC_001978.2 + 7412 0.69 0.628479
Target:  5'- aGGAA-GCUGUGAAGCUugCCGUCAc-- -3'
miRNA:   3'- cCCUUgUGACGCUUCGA--GGCAGUacu -5'
8125 3' -52.1 NC_001978.2 + 23064 0.7 0.605592
Target:  5'- uGGGAGCACUcaugGCGAAGCgUUCGaUC-UGGg -3'
miRNA:   3'- -CCCUUGUGA----CGCUUCG-AGGC-AGuACU- -5'
8125 3' -52.1 NC_001978.2 + 21578 0.71 0.548979
Target:  5'- cGGGucAGCACguaccGaCGggGCUUCGUCAUGc -3'
miRNA:   3'- -CCC--UUGUGa----C-GCuuCGAGGCAGUACu -5'
8125 3' -52.1 NC_001978.2 + 39489 0.71 0.526768
Target:  5'- uGGAcaaGCuguACUGCGAguguGGCgCCGUCAUGAc -3'
miRNA:   3'- cCCU---UG---UGACGCU----UCGaGGCAGUACU- -5'
8125 3' -52.1 NC_001978.2 + 20416 0.71 0.515788
Target:  5'- cGGGGugACcgGCGucAGCUCCGUCu--- -3'
miRNA:   3'- -CCCUugUGa-CGCu-UCGAGGCAGuacu -5'
8125 3' -52.1 NC_001978.2 + 11040 0.72 0.483436
Target:  5'- -uGGGCGCUGCGGAcGuCUCCGgCGUGAu -3'
miRNA:   3'- ccCUUGUGACGCUU-C-GAGGCaGUACU- -5'
8125 3' -52.1 NC_001978.2 + 31261 0.75 0.306208
Target:  5'- aGGucuGCACUGUGggGCUCCGUUu--- -3'
miRNA:   3'- cCCu--UGUGACGCuuCGAGGCAGuacu -5'
8125 3' -52.1 NC_001978.2 + 8834 0.76 0.268661
Target:  5'- cGGGGGCACUgaGCGccGCacgcCCGUCAUGAc -3'
miRNA:   3'- -CCCUUGUGA--CGCuuCGa---GGCAGUACU- -5'
8125 3' -52.1 NC_001978.2 + 2328 0.8 0.15016
Target:  5'- uGGGGCACUGgGAAGCUCCGgcggAUGAc -3'
miRNA:   3'- cCCUUGUGACgCUUCGAGGCag--UACU- -5'
8125 3' -52.1 NC_001978.2 + 26448 1.12 0.000985
Target:  5'- uGGGAACACUGCGAAGCUCCGUCAUGAg -3'
miRNA:   3'- -CCCUUGUGACGCUUCGAGGCAGUACU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.