miRNA display CGI


Results 1 - 15 of 15 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
8125 5' -56.6 NC_001978.2 + 5359 0.66 0.591011
Target:  5'- -uUCAcGGUGAucacgGGUCGgGCGACcgCCGg -3'
miRNA:   3'- gcAGUaCCACU-----UCGGCgCGCUGa-GGC- -5'
8125 5' -56.6 NC_001978.2 + 11890 0.66 0.591011
Target:  5'- gGcCcgGGUGAucaCCGguUGCGGCUCCGg -3'
miRNA:   3'- gCaGuaCCACUuc-GGC--GCGCUGAGGC- -5'
8125 5' -56.6 NC_001978.2 + 3383 0.66 0.580043
Target:  5'- aGUCcuguUGGguUGGuucacGCCGCGCGACgUCCu -3'
miRNA:   3'- gCAGu---ACC--ACUu----CGGCGCGCUG-AGGc -5'
8125 5' -56.6 NC_001978.2 + 19871 0.66 0.580043
Target:  5'- gCGcCGUGccgGggGCCGaCGCGauucacgcGCUCCGg -3'
miRNA:   3'- -GCaGUACca-CuuCGGC-GCGC--------UGAGGC- -5'
8125 5' -56.6 NC_001978.2 + 13265 0.66 0.556079
Target:  5'- gCGUCcgGGUGGcacagcuauuacGCCGgGCGgguGCUCCa -3'
miRNA:   3'- -GCAGuaCCACUu-----------CGGCgCGC---UGAGGc -5'
8125 5' -56.6 NC_001978.2 + 16444 0.66 0.546356
Target:  5'- gCGgCGUGGUGAacccGGuuGCGaaguaucUGACUCCGc -3'
miRNA:   3'- -GCaGUACCACU----UCggCGC-------GCUGAGGC- -5'
8125 5' -56.6 NC_001978.2 + 10882 0.67 0.504921
Target:  5'- gCGUCcgGGUGGacccguguuGGCgaGCGUGGC-CCGg -3'
miRNA:   3'- -GCAGuaCCACU---------UCGg-CGCGCUGaGGC- -5'
8125 5' -56.6 NC_001978.2 + 41397 0.67 0.494511
Target:  5'- cCGUUcUGaG-GggGCgGgGCGGCUCCGa -3'
miRNA:   3'- -GCAGuAC-CaCuuCGgCgCGCUGAGGC- -5'
8125 5' -56.6 NC_001978.2 + 28742 0.69 0.424679
Target:  5'- uCGUCGgauUGGaUGAuucGCCGCGCGAUUgUCGg -3'
miRNA:   3'- -GCAGU---ACC-ACUu--CGGCGCGCUGA-GGC- -5'
8125 5' -56.6 NC_001978.2 + 31275 0.69 0.414245
Target:  5'- gGUCGgaagGGUGAAGgucugcaCUGUGgGGCUCCGu -3'
miRNA:   3'- gCAGUa---CCACUUC-------GGCGCgCUGAGGC- -5'
8125 5' -56.6 NC_001978.2 + 5663 0.69 0.38751
Target:  5'- cCGUCAg---GAuGCCGCGCGGCUgacCCGu -3'
miRNA:   3'- -GCAGUaccaCUuCGGCGCGCUGA---GGC- -5'
8125 5' -56.6 NC_001978.2 + 5649 0.7 0.344162
Target:  5'- -----cGGUGAGGCUGaCGcCGACUCCa -3'
miRNA:   3'- gcaguaCCACUUCGGC-GC-GCUGAGGc -5'
8125 5' -56.6 NC_001978.2 + 35038 0.71 0.319877
Target:  5'- cCGUCA-GGUGcuGcCCGCGCGuggcuuccuuGCUCCGu -3'
miRNA:   3'- -GCAGUaCCACuuC-GGCGCGC----------UGAGGC- -5'
8125 5' -56.6 NC_001978.2 + 40022 0.73 0.241939
Target:  5'- aGUCGUGGUGggGgCGCGCGuCa--- -3'
miRNA:   3'- gCAGUACCACuuCgGCGCGCuGaggc -5'
8125 5' -56.6 NC_001978.2 + 26406 1.09 0.000535
Target:  5'- uCGUCAUGGUGAAGCCGCGCGACUCCGg -3'
miRNA:   3'- -GCAGUACCACUUCGGCGCGCUGAGGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.