miRNA display CGI


Results 1 - 20 of 24 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
8127 3' -53 NC_001978.2 + 5709 0.66 0.792943
Target:  5'- cCCGUCGGCGUa-CCGcaaGAACGC-GAa -3'
miRNA:   3'- -GGCAGUCGCAgaGGCa--CUUGUGaCUg -5'
8127 3' -53 NC_001978.2 + 6936 0.66 0.792943
Target:  5'- gCCGUCAGUgGUUUCaGUGGACuc-GACa -3'
miRNA:   3'- -GGCAGUCG-CAGAGgCACUUGugaCUG- -5'
8127 3' -53 NC_001978.2 + 6795 0.66 0.782835
Target:  5'- gCCGcuuGCG-CUgCCGUGAACGCcGACc -3'
miRNA:   3'- -GGCaguCGCaGA-GGCACUUGUGaCUG- -5'
8127 3' -53 NC_001978.2 + 5200 0.66 0.762136
Target:  5'- gCGUCGuCGUCguggUCGgcgGAACGCUGAg -3'
miRNA:   3'- gGCAGUcGCAGa---GGCa--CUUGUGACUg -5'
8127 3' -53 NC_001978.2 + 12391 0.66 0.751569
Target:  5'- gCCGaaGGCGUCgaccaCGUucACGCUGACc -3'
miRNA:   3'- -GGCagUCGCAGag---GCAcuUGUGACUG- -5'
8127 3' -53 NC_001978.2 + 6650 0.67 0.740873
Target:  5'- uUGUCuccCGUCUCCGcGAagguGCACUGAa -3'
miRNA:   3'- gGCAGuc-GCAGAGGCaCU----UGUGACUg -5'
8127 3' -53 NC_001978.2 + 23022 0.67 0.730062
Target:  5'- cCCcUCAGCG-C-CCGUGuaagGCACUGAg -3'
miRNA:   3'- -GGcAGUCGCaGaGGCACu---UGUGACUg -5'
8127 3' -53 NC_001978.2 + 32960 0.67 0.697059
Target:  5'- aCCGgcUCAGUGUCggCGUGGucgacguaGCGCUGAg -3'
miRNA:   3'- -GGC--AGUCGCAGagGCACU--------UGUGACUg -5'
8127 3' -53 NC_001978.2 + 16065 0.68 0.674704
Target:  5'- uCCGUCAa---CUCUGUGAACGgUGACc -3'
miRNA:   3'- -GGCAGUcgcaGAGGCACUUGUgACUG- -5'
8127 3' -53 NC_001978.2 + 34258 0.68 0.674704
Target:  5'- gCCGUCGGCGgagCUugCCG-GAgccACGCUGuACa -3'
miRNA:   3'- -GGCAGUCGCa--GA--GGCaCU---UGUGAC-UG- -5'
8127 3' -53 NC_001978.2 + 32537 0.68 0.639751
Target:  5'- gUCGUCAGUcggucgaGUCggcaCCGUGAGcCACUGGg -3'
miRNA:   3'- -GGCAGUCG-------CAGa---GGCACUU-GUGACUg -5'
8127 3' -53 NC_001978.2 + 11412 0.69 0.628445
Target:  5'- cCCGggcgCAGCGUCcgaccgaacggccUUCGUGAugGCACgGGCa -3'
miRNA:   3'- -GGCa---GUCGCAG-------------AGGCACU--UGUGaCUG- -5'
8127 3' -53 NC_001978.2 + 22321 0.69 0.606981
Target:  5'- gCCGUCGGCGUCgagCCauacGCGCaUGACc -3'
miRNA:   3'- -GGCAGUCGCAGa--GGcacuUGUG-ACUG- -5'
8127 3' -53 NC_001978.2 + 18379 0.69 0.606981
Target:  5'- uUGUCGGCGUCgcuacggCCGUGAA-GCcgGACu -3'
miRNA:   3'- gGCAGUCGCAGa------GGCACUUgUGa-CUG- -5'
8127 3' -53 NC_001978.2 + 35037 0.69 0.606981
Target:  5'- cCCGUCAggugcugcccgcGCGUggcuuccuugCUCCGUccugggcgGGGCACUGACc -3'
miRNA:   3'- -GGCAGU------------CGCA----------GAGGCA--------CUUGUGACUG- -5'
8127 3' -53 NC_001978.2 + 12508 0.7 0.55106
Target:  5'- uCCGUCGGCGUUcCCGgucGGcuucACGCUGuACg -3'
miRNA:   3'- -GGCAGUCGCAGaGGCa--CU----UGUGAC-UG- -5'
8127 3' -53 NC_001978.2 + 21029 0.7 0.529104
Target:  5'- uCCGUCAGCGUCUCCaGUuccuuCG-UGGCg -3'
miRNA:   3'- -GGCAGUCGCAGAGG-CAcuu--GUgACUG- -5'
8127 3' -53 NC_001978.2 + 17814 0.71 0.473698
Target:  5'- gCCGcguuUCAGCGgucguugggcuaCUCCGgcaaGGACGCUGACg -3'
miRNA:   3'- -GGC----AGUCGCa-----------GAGGCa---CUUGUGACUG- -5'
8127 3' -53 NC_001978.2 + 17901 0.71 0.465429
Target:  5'- gCCGUCAGCGUCcuugCCG-GAGuagcccaacgacCGCUGAa -3'
miRNA:   3'- -GGCAGUCGCAGa---GGCaCUU------------GUGACUg -5'
8127 3' -53 NC_001978.2 + 40045 0.74 0.334549
Target:  5'- gCGUCGGCGUCUUCGggGAACcAUUGGu -3'
miRNA:   3'- gGCAGUCGCAGAGGCa-CUUG-UGACUg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.