miRNA display CGI


Results 1 - 20 of 22 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
8128 3' -53.2 NC_001978.2 + 31099 0.66 0.764278
Target:  5'- gCGCcUCAGCACcggucAGCUUCaCGGCAg--- -3'
miRNA:   3'- -GCGaAGUCGUG-----UCGAAG-GCUGUaccc -5'
8128 3' -53.2 NC_001978.2 + 37934 0.66 0.764278
Target:  5'- aCGUUguaCGGgACGGCgcccccgCCGACAaGGGg -3'
miRNA:   3'- -GCGAa--GUCgUGUCGaa-----GGCUGUaCCC- -5'
8128 3' -53.2 NC_001978.2 + 30050 0.66 0.732022
Target:  5'- gGC-UCAGCGCauGGC-UCCG-CAUGGu -3'
miRNA:   3'- gCGaAGUCGUG--UCGaAGGCuGUACCc -5'
8128 3' -53.2 NC_001978.2 + 10302 0.66 0.721038
Target:  5'- gGCggCGGCGUGGCUUCuCGcUAUGGGu -3'
miRNA:   3'- gCGaaGUCGUGUCGAAG-GCuGUACCC- -5'
8128 3' -53.2 NC_001978.2 + 32137 0.66 0.721038
Target:  5'- aGCUUgCcGCAUGGCUgaacgaggaagCCGACcgGGGc -3'
miRNA:   3'- gCGAA-GuCGUGUCGAa----------GGCUGuaCCC- -5'
8128 3' -53.2 NC_001978.2 + 37825 0.67 0.6988
Target:  5'- gGCUaauGCGguGCUaCCGgACGUGGGg -3'
miRNA:   3'- gCGAaguCGUguCGAaGGC-UGUACCC- -5'
8128 3' -53.2 NC_001978.2 + 13532 0.67 0.68757
Target:  5'- -uCUUCGGCA-AGC-UCCGAUAUGGc -3'
miRNA:   3'- gcGAAGUCGUgUCGaAGGCUGUACCc -5'
8128 3' -53.2 NC_001978.2 + 6371 0.67 0.68419
Target:  5'- gCGCgagUguGCGCAcacaccaccgaaucGUUUCCGGCGUcGGGu -3'
miRNA:   3'- -GCGa--AguCGUGU--------------CGAAGGCUGUA-CCC- -5'
8128 3' -53.2 NC_001978.2 + 35469 0.67 0.676284
Target:  5'- gGCguccgCAGCaACGGCgUUCGGCcUGGGa -3'
miRNA:   3'- gCGaa---GUCG-UGUCGaAGGCUGuACCC- -5'
8128 3' -53.2 NC_001978.2 + 34703 0.68 0.653589
Target:  5'- gGCUcagUCGGCGuCGGCUcgaacCCGGCAagcUGGGc -3'
miRNA:   3'- gCGA---AGUCGU-GUCGAa----GGCUGU---ACCC- -5'
8128 3' -53.2 NC_001978.2 + 11406 0.68 0.635367
Target:  5'- cCGUUUCccgGGCGCAGCgUCCGACcgaacggccuucgugAUGGc -3'
miRNA:   3'- -GCGAAG---UCGUGUCGaAGGCUG---------------UACCc -5'
8128 3' -53.2 NC_001978.2 + 31459 0.68 0.619414
Target:  5'- gCGCUcuUCcGCugAGCUaCCGGagcCAUGGGc -3'
miRNA:   3'- -GCGA--AGuCGugUCGAaGGCU---GUACCC- -5'
8128 3' -53.2 NC_001978.2 + 16914 0.69 0.585345
Target:  5'- aCGCUgaaUCAG-GCAGCgUCCGACGUGc- -3'
miRNA:   3'- -GCGA---AGUCgUGUCGaAGGCUGUACcc -5'
8128 3' -53.2 NC_001978.2 + 24920 0.69 0.562825
Target:  5'- aCGCUgc-GCACAacauGCUUCCGGCGUGc- -3'
miRNA:   3'- -GCGAaguCGUGU----CGAAGGCUGUACcc -5'
8128 3' -53.2 NC_001978.2 + 12048 0.69 0.540544
Target:  5'- uCGCUaCGGCgcgcgGCGGCUUCCGGCAc--- -3'
miRNA:   3'- -GCGAaGUCG-----UGUCGAAGGCUGUaccc -5'
8128 3' -53.2 NC_001978.2 + 35279 0.7 0.507712
Target:  5'- aGCUUguGCGCGGCU-CCGuCAucUGGa -3'
miRNA:   3'- gCGAAguCGUGUCGAaGGCuGU--ACCc -5'
8128 3' -53.2 NC_001978.2 + 13605 0.71 0.455015
Target:  5'- -aCUUCAGCACccGGUUaCCGACcUGGGu -3'
miRNA:   3'- gcGAAGUCGUG--UCGAaGGCUGuACCC- -5'
8128 3' -53.2 NC_001978.2 + 8676 0.71 0.424851
Target:  5'- aGgUUCAGCuuCAGCUUCcCGACGUcggcGGGc -3'
miRNA:   3'- gCgAAGUCGu-GUCGAAG-GCUGUA----CCC- -5'
8128 3' -53.2 NC_001978.2 + 23977 0.74 0.301265
Target:  5'- aCGCUcacUCAGCACagcgcgacgGGCUUCCGGC--GGGu -3'
miRNA:   3'- -GCGA---AGUCGUG---------UCGAAGGCUGuaCCC- -5'
8128 3' -53.2 NC_001978.2 + 13151 0.74 0.286053
Target:  5'- aCGCUUCAGcCugGGCgUUCCGGCcuuGUGGu -3'
miRNA:   3'- -GCGAAGUC-GugUCG-AAGGCUG---UACCc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.