Results 1 - 11 of 11 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
8129 | 3' | -59.3 | NC_001978.2 | + | 9344 | 0.68 | 0.305897 |
Target: 5'- gUCGGcccaacuucGUCGCCCAGGaCCG-UCGCGa- -3' miRNA: 3'- aGGCC---------CAGCGGGUCC-GGUaAGCGUau -5' |
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8129 | 3' | -59.3 | NC_001978.2 | + | 11094 | 0.67 | 0.321407 |
Target: 5'- gUCCGcagCGCCCAGGCgAcUUCGCGc- -3' miRNA: 3'- -AGGCccaGCGGGUCCGgU-AAGCGUau -5' |
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8129 | 3' | -59.3 | NC_001978.2 | + | 11712 | 0.69 | 0.23695 |
Target: 5'- aCCGGGUCGUCCGGcGCCGgucccUGCc-- -3' miRNA: 3'- aGGCCCAGCGGGUC-CGGUaa---GCGuau -5' |
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8129 | 3' | -59.3 | NC_001978.2 | + | 13215 | 0.67 | 0.329379 |
Target: 5'- gCCGGaaCGCCCAGGCUGaa-GCGUGu -3' miRNA: 3'- aGGCCcaGCGGGUCCGGUaagCGUAU- -5' |
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8129 | 3' | -59.3 | NC_001978.2 | + | 21596 | 0.7 | 0.230821 |
Target: 5'- -aCGGG-CGCUCAGGCg--UCGCGUAc -3' miRNA: 3'- agGCCCaGCGGGUCCGguaAGCGUAU- -5' |
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8129 | 3' | -59.3 | NC_001978.2 | + | 21736 | 0.69 | 0.243213 |
Target: 5'- aCCGGGUUGCCCAcuGCC-UUCaGCAc- -3' miRNA: 3'- aGGCCCAGCGGGUc-CGGuAAG-CGUau -5' |
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8129 | 3' | -59.3 | NC_001978.2 | + | 24475 | 0.71 | 0.178575 |
Target: 5'- cCCGGcuucagcgcucgcacGUCGCCCAGGgCAggCGCAg- -3' miRNA: 3'- aGGCC---------------CAGCGGGUCCgGUaaGCGUau -5' |
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8129 | 3' | -59.3 | NC_001978.2 | + | 25422 | 0.68 | 0.305897 |
Target: 5'- aCCGGuucgggcucgacGUCGCCCAGGCUGaggCGCu-- -3' miRNA: 3'- aGGCC------------CAGCGGGUCCGGUaa-GCGuau -5' |
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8129 | 3' | -59.3 | NC_001978.2 | + | 26524 | 0.66 | 0.389211 |
Target: 5'- -aCGaGGUCGaCCAcGCCGUUCGCGa- -3' miRNA: 3'- agGC-CCAGCgGGUcCGGUAAGCGUau -5' |
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8129 | 3' | -59.3 | NC_001978.2 | + | 27226 | 1.06 | 0.000388 |
Target: 5'- cUCCGGGUCGCCCAGGCCAUUCGCAUAc -3' miRNA: 3'- -AGGCCCAGCGGGUCCGGUAAGCGUAU- -5' |
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8129 | 3' | -59.3 | NC_001978.2 | + | 30734 | 0.67 | 0.362715 |
Target: 5'- gUCGGGUCGCUgGGGaCCGUcaGCAc- -3' miRNA: 3'- aGGCCCAGCGGgUCC-GGUAagCGUau -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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