miRNA display CGI


Results 1 - 10 of 10 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
8131 3' -57.4 NC_001978.2 + 22370 0.66 0.517977
Target:  5'- ----aGUCGCCCaugaucaggUGAGgcuucccggaccgGUCCGGCGUc -3'
miRNA:   3'- caaucCAGCGGG---------ACUCa------------CAGGCCGCG- -5'
8131 3' -57.4 NC_001978.2 + 32594 0.66 0.486639
Target:  5'- -----uUCGCCCUugcucgacgcguacGAguaucgcGUGUCCGGCGCu -3'
miRNA:   3'- caauccAGCGGGA--------------CU-------CACAGGCCGCG- -5'
8131 3' -57.4 NC_001978.2 + 35582 0.67 0.460225
Target:  5'- ---cGG-CGcCCCUGAGcGUC-GGCGCg -3'
miRNA:   3'- caauCCaGC-GGGACUCaCAGgCCGCG- -5'
8131 3' -57.4 NC_001978.2 + 883 0.67 0.430721
Target:  5'- --cAGGU-GUCCgaaugggucGAGUGcUCCGGCGCc -3'
miRNA:   3'- caaUCCAgCGGGa--------CUCAC-AGGCCGCG- -5'
8131 3' -57.4 NC_001978.2 + 36685 0.68 0.384115
Target:  5'- ---cGGUCGCggaaCCUGAGccgGUaCCGGCGg -3'
miRNA:   3'- caauCCAGCG----GGACUCa--CA-GGCCGCg -5'
8131 3' -57.4 NC_001978.2 + 36563 0.68 0.384115
Target:  5'- -cUGGGUCGgCgUGgcAGUGcacuugaucgcUCCGGCGCu -3'
miRNA:   3'- caAUCCAGCgGgAC--UCAC-----------AGGCCGCG- -5'
8131 3' -57.4 NC_001978.2 + 1833 0.7 0.286664
Target:  5'- --aGGGUUcaaGCCCUGuugccGUCCGGCGUc -3'
miRNA:   3'- caaUCCAG---CGGGACuca--CAGGCCGCG- -5'
8131 3' -57.4 NC_001978.2 + 26163 0.72 0.2394
Target:  5'- ---cGG-CGCCCUGAGUGcUCgacaccugaaCGGCGCc -3'
miRNA:   3'- caauCCaGCGGGACUCAC-AG----------GCCGCG- -5'
8131 3' -57.4 NC_001978.2 + 112 0.72 0.227147
Target:  5'- --cGGGUCGUuggCCUGGGgggcgccuggGUCCGGCGg -3'
miRNA:   3'- caaUCCAGCG---GGACUCa---------CAGGCCGCg -5'
8131 3' -57.4 NC_001978.2 + 28128 1.1 0.000334
Target:  5'- cGUUAGGUCGCCCUGAGUGUCCGGCGCc -3'
miRNA:   3'- -CAAUCCAGCGGGACUCACAGGCCGCG- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.