miRNA display CGI


Results 1 - 17 of 17 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
8132 3' -55.2 NC_001978.2 + 18458 0.66 0.637003
Target:  5'- ----cCGGGAAGUCCGGCuUCACGg- -3'
miRNA:   3'- caucaGCUCUUCGGGUCGcAGUGCgu -5'
8132 3' -55.2 NC_001978.2 + 27013 0.66 0.637003
Target:  5'- -aGGaUGAGggGCuUUGGCGUCGCGUg -3'
miRNA:   3'- caUCaGCUCuuCG-GGUCGCAGUGCGu -5'
8132 3' -55.2 NC_001978.2 + 38448 0.66 0.622285
Target:  5'- -gAGcgCGAGAauucgagcgcagcaAGCCCAGCGaCACaGCGu -3'
miRNA:   3'- caUCa-GCUCU--------------UCGGGUCGCaGUG-CGU- -5'
8132 3' -55.2 NC_001978.2 + 35818 0.66 0.603064
Target:  5'- aGUGGUCGAGcuGGGCgaCGGCGUUGC-CAa -3'
miRNA:   3'- -CAUCAGCUC--UUCGg-GUCGCAGUGcGU- -5'
8132 3' -55.2 NC_001978.2 + 26042 0.66 0.603064
Target:  5'- -cAGUCGgcuggGGAAcuuGCCCGG-GUCGCGCu -3'
miRNA:   3'- caUCAGC-----UCUU---CGGGUCgCAGUGCGu -5'
8132 3' -55.2 NC_001978.2 + 15155 0.66 0.591791
Target:  5'- uGUGGUCGcGAAGCUCA-CGauucUCACGCc -3'
miRNA:   3'- -CAUCAGCuCUUCGGGUcGC----AGUGCGu -5'
8132 3' -55.2 NC_001978.2 + 32261 0.67 0.580553
Target:  5'- --cGUCGAccgggucacGAcGCCCAGCGgacggacguUCACGCGc -3'
miRNA:   3'- cauCAGCU---------CUuCGGGUCGC---------AGUGCGU- -5'
8132 3' -55.2 NC_001978.2 + 22333 0.67 0.580553
Target:  5'- cGgcGUCGGGuuGCCguCGGCGUCgagccauacGCGCAu -3'
miRNA:   3'- -CauCAGCUCuuCGG--GUCGCAG---------UGCGU- -5'
8132 3' -55.2 NC_001978.2 + 5000 0.67 0.580553
Target:  5'- --cGUCaGGGAccgaAGCUCAGCGgucgCACGCu -3'
miRNA:   3'- cauCAG-CUCU----UCGGGUCGCa---GUGCGu -5'
8132 3' -55.2 NC_001978.2 + 3199 0.67 0.580553
Target:  5'- aUAGUCGAGccauUCCGGCGUCACu-- -3'
miRNA:   3'- cAUCAGCUCuuc-GGGUCGCAGUGcgu -5'
8132 3' -55.2 NC_001978.2 + 225 0.67 0.558222
Target:  5'- -gGGUCGAGc-GCCCcGUGUgccCGCGCAc -3'
miRNA:   3'- caUCAGCUCuuCGGGuCGCA---GUGCGU- -5'
8132 3' -55.2 NC_001978.2 + 1914 0.67 0.547147
Target:  5'- ----aCGGGcggcacuGCCCAGCGUCAgCGCGu -3'
miRNA:   3'- caucaGCUCuu-----CGGGUCGCAGU-GCGU- -5'
8132 3' -55.2 NC_001978.2 + 870 0.69 0.441395
Target:  5'- -gGGUCGAGu-GCuCCGGCGccugggCGCGCGa -3'
miRNA:   3'- caUCAGCUCuuCG-GGUCGCa-----GUGCGU- -5'
8132 3' -55.2 NC_001978.2 + 19763 0.7 0.374652
Target:  5'- cGUAGUCGAGcgcuucGGCCCAGUccaugcccagCGCGCGa -3'
miRNA:   3'- -CAUCAGCUCu-----UCGGGUCGca--------GUGCGU- -5'
8132 3' -55.2 NC_001978.2 + 40795 0.71 0.354263
Target:  5'- -gGGUCGAgcgcucuucaauaaGAAGCCgGGCGaCACGCu -3'
miRNA:   3'- caUCAGCU--------------CUUCGGgUCGCaGUGCGu -5'
8132 3' -55.2 NC_001978.2 + 22489 0.75 0.179871
Target:  5'- -cGGUCGAGAcuGGCCCGGaCGUCuuCGCc -3'
miRNA:   3'- caUCAGCUCU--UCGGGUC-GCAGu-GCGu -5'
8132 3' -55.2 NC_001978.2 + 29322 1.08 0.000755
Target:  5'- uGUAGUCGAGAAGCCCAGCGUCACGCAu -3'
miRNA:   3'- -CAUCAGCUCUUCGGGUCGCAGUGCGU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.