miRNA display CGI


Results 1 - 20 of 58 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
8132 5' -61 NC_001978.2 + 6659 0.66 0.373641
Target:  5'- uGCCCCc-GugGcUAUGCGCU-CCGGCg -3'
miRNA:   3'- -CGGGGucCugCaGUGCGCGAcGGCUG- -5'
8132 5' -61 NC_001978.2 + 29471 0.66 0.373641
Target:  5'- cCCCCAGGACcggcccccuagGUCA-GCGUcGgCGACg -3'
miRNA:   3'- cGGGGUCCUG-----------CAGUgCGCGaCgGCUG- -5'
8132 5' -61 NC_001978.2 + 27211 0.66 0.373641
Target:  5'- -aCCgGGcGACGUCcgAUGCGCUcGCCGGu -3'
miRNA:   3'- cgGGgUC-CUGCAG--UGCGCGA-CGGCUg -5'
8132 5' -61 NC_001978.2 + 16654 0.66 0.373641
Target:  5'- uGCCCCAGGcUGggCaggaaaccgGCGCGCuUGCCG-Cu -3'
miRNA:   3'- -CGGGGUCCuGCa-G---------UGCGCG-ACGGCuG- -5'
8132 5' -61 NC_001978.2 + 7632 0.66 0.372782
Target:  5'- aGCUCaAGcGACGUCGCGUcgaacucgaccacGCUGCCcGCa -3'
miRNA:   3'- -CGGGgUC-CUGCAGUGCG-------------CGACGGcUG- -5'
8132 5' -61 NC_001978.2 + 23623 0.66 0.368505
Target:  5'- aGCUCCGGGuCGUCGgcgaGCGUgaaggucacggugauUGCCGGg -3'
miRNA:   3'- -CGGGGUCCuGCAGUg---CGCG---------------ACGGCUg -5'
8132 5' -61 NC_001978.2 + 33993 0.66 0.365109
Target:  5'- cGUCCUGGGACGcguacuuucUCGCggGUGCUGCCuggguGGCg -3'
miRNA:   3'- -CGGGGUCCUGC---------AGUG--CGCGACGG-----CUG- -5'
8132 5' -61 NC_001978.2 + 15601 0.66 0.365109
Target:  5'- uCCCUuguugggcGGGGCGcUCACGCGUucaacgGCuCGACg -3'
miRNA:   3'- cGGGG--------UCCUGC-AGUGCGCGa-----CG-GCUG- -5'
8132 5' -61 NC_001978.2 + 39229 0.66 0.362575
Target:  5'- cGCCCCGGGucggcacggcgucaGCGUcCAUGCGCUuacaaaGCCc-- -3'
miRNA:   3'- -CGGGGUCC--------------UGCA-GUGCGCGA------CGGcug -5'
8132 5' -61 NC_001978.2 + 5666 0.66 0.348452
Target:  5'- cGUCCguCAGGAUG-C-CGCGCgGCUGACc -3'
miRNA:   3'- -CGGG--GUCCUGCaGuGCGCGaCGGCUG- -5'
8132 5' -61 NC_001978.2 + 33644 0.66 0.348452
Target:  5'- gGCCCgGGGucacacccgACgGUCACG-GC-GCCGACa -3'
miRNA:   3'- -CGGGgUCC---------UG-CAGUGCgCGaCGGCUG- -5'
8132 5' -61 NC_001978.2 + 36883 0.66 0.348452
Target:  5'- -aCCCGGuuGAgGUCGCuGcCGCUGCCGGu -3'
miRNA:   3'- cgGGGUC--CUgCAGUG-C-GCGACGGCUg -5'
8132 5' -61 NC_001978.2 + 11994 0.66 0.347633
Target:  5'- gGUUUCAGGACGgcgucggcuaUgGCGCGUcucagcuUGCCGACu -3'
miRNA:   3'- -CGGGGUCCUGC----------AgUGCGCG-------ACGGCUG- -5'
8132 5' -61 NC_001978.2 + 30639 0.66 0.340329
Target:  5'- aCUCCGgcGGACGUUGCgGCGCUugaagacguGCUGACg -3'
miRNA:   3'- cGGGGU--CCUGCAGUG-CGCGA---------CGGCUG- -5'
8132 5' -61 NC_001978.2 + 35542 0.66 0.340329
Target:  5'- cGCuCCCAGGcCGa-ACGCcguuGCUGCgGACg -3'
miRNA:   3'- -CG-GGGUCCuGCagUGCG----CGACGgCUG- -5'
8132 5' -61 NC_001978.2 + 33127 0.66 0.332344
Target:  5'- cGUCCUGGGcaaGCGUuggCACGuUGCcGCCGACg -3'
miRNA:   3'- -CGGGGUCC---UGCA---GUGC-GCGaCGGCUG- -5'
8132 5' -61 NC_001978.2 + 26492 0.66 0.332344
Target:  5'- aGCUCCgcgcgcacgacaAGGGCGaCAUGCucacugugucGCUGCCGAUc -3'
miRNA:   3'- -CGGGG------------UCCUGCaGUGCG----------CGACGGCUG- -5'
8132 5' -61 NC_001978.2 + 13772 0.67 0.324498
Target:  5'- -gUCUAGGGCGUUgucaGCGaUGCCGACa -3'
miRNA:   3'- cgGGGUCCUGCAGug--CGCgACGGCUG- -5'
8132 5' -61 NC_001978.2 + 27996 0.67 0.31679
Target:  5'- aGCCCCAGGACG--GCG-GCauuggGaCCGGCc -3'
miRNA:   3'- -CGGGGUCCUGCagUGCgCGa----C-GGCUG- -5'
8132 5' -61 NC_001978.2 + 4 0.67 0.31679
Target:  5'- gGCCCCAGcuCGgaaaaCGCGCGCUaggugagccGCCGGa -3'
miRNA:   3'- -CGGGGUCcuGCa----GUGCGCGA---------CGGCUg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.