miRNA display CGI


Results 1 - 15 of 15 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
8133 5' -59.1 NC_001978.2 + 40097 0.66 0.414546
Target:  5'- cGAAGUCGaCua--CGGGCAGGGGGc- -3'
miRNA:   3'- -CUUCAGCcGuuggGCCCGUCCCUCac -5'
8133 5' -59.1 NC_001978.2 + 18525 0.66 0.404302
Target:  5'- gGGAGUCGGCAACCUGaGCGGcgcuaugcccccaGGAuggcGUGa -3'
miRNA:   3'- -CUUCAGCCGUUGGGCcCGUC-------------CCU----CAC- -5'
8133 5' -59.1 NC_001978.2 + 40696 0.68 0.335622
Target:  5'- -cGGUCGcuCAACCCuGGGagagaucaGGGGAGUGa -3'
miRNA:   3'- cuUCAGCc-GUUGGG-CCCg-------UCCCUCAC- -5'
8133 5' -59.1 NC_001978.2 + 20870 0.68 0.319643
Target:  5'- ----cCGGCuguACgCCGGGCAGGGAa-- -3'
miRNA:   3'- cuucaGCCGu--UG-GGCCCGUCCCUcac -5'
8133 5' -59.1 NC_001978.2 + 35595 0.68 0.3111
Target:  5'- uGAGUCGGCAGCggguaugccgucuCCGGcGCguugGGGGAcGUGa -3'
miRNA:   3'- cUUCAGCCGUUG-------------GGCC-CG----UCCCU-CAC- -5'
8133 5' -59.1 NC_001978.2 + 36242 0.7 0.241994
Target:  5'- gGGAGUCGGCAACCCGGGacuaGAa-- -3'
miRNA:   3'- -CUUCAGCCGUUGGGCCCguccCUcac -5'
8133 5' -59.1 NC_001978.2 + 22699 0.71 0.212223
Target:  5'- gGGAGUCGGCAACCCgcuaccGGGCGcgucgcuGAGUGc -3'
miRNA:   3'- -CUUCAGCCGUUGGG------CCCGUcc-----CUCAC- -5'
8133 5' -59.1 NC_001978.2 + 25084 0.71 0.195913
Target:  5'- gGGAGUCGGCAACCCGgcucagucGGCGGGc---- -3'
miRNA:   3'- -CUUCAGCCGUUGGGC--------CCGUCCcucac -5'
8133 5' -59.1 NC_001978.2 + 16428 0.72 0.180709
Target:  5'- -uGGUCGGUcuACCCGGGCGGcGuGGUGa -3'
miRNA:   3'- cuUCAGCCGu-UGGGCCCGUC-CcUCAC- -5'
8133 5' -59.1 NC_001978.2 + 28473 0.72 0.175878
Target:  5'- ---uUCGGCAACCUGGGCGccGGAGUu -3'
miRNA:   3'- cuucAGCCGUUGGGCCCGUc-CCUCAc -5'
8133 5' -59.1 NC_001978.2 + 27611 0.72 0.171163
Target:  5'- gGGAGUCGGCAACCCGGG---GGAa-- -3'
miRNA:   3'- -CUUCAGCCGUUGGGCCCgucCCUcac -5'
8133 5' -59.1 NC_001978.2 + 27109 0.72 0.171163
Target:  5'- cGGAGUCGGCGggcauugugGCCUGGGCGGuGcgcggugcggucGAGUGg -3'
miRNA:   3'- -CUUCAGCCGU---------UGGGCCCGUC-C------------CUCAC- -5'
8133 5' -59.1 NC_001978.2 + 23061 0.74 0.129908
Target:  5'- --cGUCGGCAACCCGGGCGGu----- -3'
miRNA:   3'- cuuCAGCCGUUGGGCCCGUCccucac -5'
8133 5' -59.1 NC_001978.2 + 31214 0.77 0.075761
Target:  5'- gGAAGUCGGCAACCCGgGGCGGaacGUGc -3'
miRNA:   3'- -CUUCAGCCGUUGGGC-CCGUCccuCAC- -5'
8133 5' -59.1 NC_001978.2 + 29932 1.08 0.000329
Target:  5'- gGAAGUCGGCAACCCGGGCAGGGAGUGa -3'
miRNA:   3'- -CUUCAGCCGUUGGGCCCGUCCCUCAC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.