miRNA display CGI


Results 1 - 20 of 45 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
8134 3' -57.4 NC_001978.2 + 30740 0.66 0.558886
Target:  5'- cGCucaGUCGGgucgcuGGGGACCGUCaGCa -3'
miRNA:   3'- uCGca-CAGCCguu---CCCUUGGCAGcCG- -5'
8134 3' -57.4 NC_001978.2 + 26244 0.66 0.548114
Target:  5'- cGUGUGggaCGGCGugaccuGGGuGaaGUCGGCa -3'
miRNA:   3'- uCGCACa--GCCGUu-----CCCuUggCAGCCG- -5'
8134 3' -57.4 NC_001978.2 + 6068 0.66 0.537409
Target:  5'- gGGCG--UCGaCAAGaaGACCGUCGGCg -3'
miRNA:   3'- -UCGCacAGCcGUUCccUUGGCAGCCG- -5'
8134 3' -57.4 NC_001978.2 + 5948 0.66 0.537409
Target:  5'- uGCucagGUCGGCGAacaGAACCuuGUCGGCa -3'
miRNA:   3'- uCGca--CAGCCGUUcc-CUUGG--CAGCCG- -5'
8134 3' -57.4 NC_001978.2 + 8969 0.66 0.520435
Target:  5'- cGGCGaacaGGCGAGGGgcuugcccuugcugcGgguggcgcuaucGCCGUCGGCa -3'
miRNA:   3'- -UCGCacagCCGUUCCC---------------U------------UGGCAGCCG- -5'
8134 3' -57.4 NC_001978.2 + 32980 0.66 0.516223
Target:  5'- cGCGaa-UGGCAGGGGGcacgACCGgcucagugUCGGCg -3'
miRNA:   3'- uCGCacaGCCGUUCCCU----UGGC--------AGCCG- -5'
8134 3' -57.4 NC_001978.2 + 17858 0.66 0.516223
Target:  5'- cGGCGUGcCgGGCgAAGGGucGCUGacgaagcuucUCGGCa -3'
miRNA:   3'- -UCGCACaG-CCG-UUCCCu-UGGC----------AGCCG- -5'
8134 3' -57.4 NC_001978.2 + 12835 0.66 0.505757
Target:  5'- aAGCacGUCGGC--GGGuGgCGUCGGCc -3'
miRNA:   3'- -UCGcaCAGCCGuuCCCuUgGCAGCCG- -5'
8134 3' -57.4 NC_001978.2 + 21321 0.67 0.495383
Target:  5'- cAGCGcGcUCaGGuCAAGGucGAACgCGUCGGCg -3'
miRNA:   3'- -UCGCaC-AG-CC-GUUCC--CUUG-GCAGCCG- -5'
8134 3' -57.4 NC_001978.2 + 17599 0.67 0.495383
Target:  5'- aAGCGUccggGUCGGCGGagacGGAGCCGcCcGCa -3'
miRNA:   3'- -UCGCA----CAGCCGUUc---CCUUGGCaGcCG- -5'
8134 3' -57.4 NC_001978.2 + 33554 0.67 0.495383
Target:  5'- uGCGggugucgcccuUGUCGGCGccGuGACCGUCGGg -3'
miRNA:   3'- uCGC-----------ACAGCCGUucCcUUGGCAGCCg -5'
8134 3' -57.4 NC_001978.2 + 24578 0.67 0.495383
Target:  5'- cGGCGUcaugGUCGGCAu---AugUGUCGGCg -3'
miRNA:   3'- -UCGCA----CAGCCGUucccUugGCAGCCG- -5'
8134 3' -57.4 NC_001978.2 + 1750 0.67 0.474932
Target:  5'- gGGuCGUGUCGGC---GGAcGCCGgaCGGCa -3'
miRNA:   3'- -UC-GCACAGCCGuucCCU-UGGCa-GCCG- -5'
8134 3' -57.4 NC_001978.2 + 16959 0.67 0.464865
Target:  5'- cAGCGUGUCGGgAAGu--GCCGUCu-- -3'
miRNA:   3'- -UCGCACAGCCgUUCccuUGGCAGccg -5'
8134 3' -57.4 NC_001978.2 + 16339 0.67 0.444097
Target:  5'- gAGCGccccaacGUCGGCAGcGGuaagcguGACCGUCGGa -3'
miRNA:   3'- -UCGCa------CAGCCGUUcCC-------UUGGCAGCCg -5'
8134 3' -57.4 NC_001978.2 + 18555 0.68 0.435356
Target:  5'- gGGCGcgcucaGUCgGGCAAGGauuCCGUCGGg -3'
miRNA:   3'- -UCGCa-----CAG-CCGUUCCcuuGGCAGCCg -5'
8134 3' -57.4 NC_001978.2 + 1979 0.68 0.435356
Target:  5'- --aGUG-CGGCaAAGGGu-CCGUCGGg -3'
miRNA:   3'- ucgCACaGCCG-UUCCCuuGGCAGCCg -5'
8134 3' -57.4 NC_001978.2 + 2558 0.68 0.425763
Target:  5'- gAGUuaGUCGGgAAcgccucaaccGGGaAGCCGUCGGCu -3'
miRNA:   3'- -UCGcaCAGCCgUU----------CCC-UUGGCAGCCG- -5'
8134 3' -57.4 NC_001978.2 + 35912 0.68 0.416296
Target:  5'- uGCcgacGUCgGGCAAGGGAAg-GUCGGCg -3'
miRNA:   3'- uCGca--CAG-CCGUUCCCUUggCAGCCG- -5'
8134 3' -57.4 NC_001978.2 + 40047 0.68 0.416296
Target:  5'- cAGCG--UCGGCGucuucGGGGAACCaUUGGUc -3'
miRNA:   3'- -UCGCacAGCCGU-----UCCCUUGGcAGCCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.