miRNA display CGI


Results 1 - 20 of 27 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
8134 5' -55.7 NC_001978.2 + 33836 0.66 0.636061
Target:  5'- cCAGCaCGcuucGCGgaacGCCUUcacgGUCGAGCGACc -3'
miRNA:   3'- -GUCG-GC----UGCac--UGGAA----CAGCUCGCUG- -5'
8134 5' -55.7 NC_001978.2 + 35918 0.66 0.636061
Target:  5'- aAGCCGACGcuaGAcgcCCUUGaUCGcugaaGGCGGCu -3'
miRNA:   3'- gUCGGCUGCa--CU---GGAAC-AGC-----UCGCUG- -5'
8134 5' -55.7 NC_001978.2 + 21089 0.66 0.636061
Target:  5'- gAGCCGAa--GGCCgaGaaGAGCGACg -3'
miRNA:   3'- gUCGGCUgcaCUGGaaCagCUCGCUG- -5'
8134 5' -55.7 NC_001978.2 + 9508 0.66 0.636061
Target:  5'- uGGCgcucgCGACGcUGACCUUGUCGc-UGACu -3'
miRNA:   3'- gUCG-----GCUGC-ACUGGAACAGCucGCUG- -5'
8134 5' -55.7 NC_001978.2 + 8246 0.66 0.634942
Target:  5'- gCGGaCGcCGUGACCUuaauggacuUGUCGAGCuugcccgGACg -3'
miRNA:   3'- -GUCgGCuGCACUGGA---------ACAGCUCG-------CUG- -5'
8134 5' -55.7 NC_001978.2 + 7305 0.66 0.629349
Target:  5'- -cGCCGcccgugucaguaACgGUGACCUUGUCGAacgccgccgucagaaGCGAa -3'
miRNA:   3'- guCGGC------------UG-CACUGGAACAGCU---------------CGCUg -5'
8134 5' -55.7 NC_001978.2 + 4479 0.66 0.624875
Target:  5'- uGGuuGaACGUGGCgUacacgucguucUGUCGcAGCGACg -3'
miRNA:   3'- gUCggC-UGCACUGgA-----------ACAGC-UCGCUG- -5'
8134 5' -55.7 NC_001978.2 + 25455 0.66 0.613695
Target:  5'- gUAGUCGGCGgcauCCUgggUGAGCGGCa -3'
miRNA:   3'- -GUCGGCUGCacu-GGAacaGCUCGCUG- -5'
8134 5' -55.7 NC_001978.2 + 12175 0.66 0.602533
Target:  5'- gGGCgGcACGUGGgCaugGUCGAGCGGa -3'
miRNA:   3'- gUCGgC-UGCACUgGaa-CAGCUCGCUg -5'
8134 5' -55.7 NC_001978.2 + 39412 0.66 0.602533
Target:  5'- cCGGCCGgaGCGUGAUCggGUCGcGCuGAa -3'
miRNA:   3'- -GUCGGC--UGCACUGGaaCAGCuCG-CUg -5'
8134 5' -55.7 NC_001978.2 + 29963 0.66 0.602533
Target:  5'- -cGCCGAC--GACCUUGcCGAcCGGCu -3'
miRNA:   3'- guCGGCUGcaCUGGAACaGCUcGCUG- -5'
8134 5' -55.7 NC_001978.2 + 17101 0.66 0.601418
Target:  5'- aGGCCGAgGUcggcuaucacgaaGGCCg-GUCGGGCgGACa -3'
miRNA:   3'- gUCGGCUgCA-------------CUGGaaCAGCUCG-CUG- -5'
8134 5' -55.7 NC_001978.2 + 1026 0.67 0.568135
Target:  5'- cCAGCaagCGGCGUcggcaacGGCCaUGUCGAGCGu- -3'
miRNA:   3'- -GUCG---GCUGCA-------CUGGaACAGCUCGCug -5'
8134 5' -55.7 NC_001978.2 + 21247 0.67 0.558234
Target:  5'- -cGCCGACGcguucGACCUUGaccUGAGCGcGCu -3'
miRNA:   3'- guCGGCUGCa----CUGGAACa--GCUCGC-UG- -5'
8134 5' -55.7 NC_001978.2 + 20669 0.67 0.558234
Target:  5'- -uGCCGACGacGAC---GUUGAGCGGCa -3'
miRNA:   3'- guCGGCUGCa-CUGgaaCAGCUCGCUG- -5'
8134 5' -55.7 NC_001978.2 + 17719 0.67 0.547292
Target:  5'- -cGuuGAUGgucACCUUGUacCGGGCGACg -3'
miRNA:   3'- guCggCUGCac-UGGAACA--GCUCGCUG- -5'
8134 5' -55.7 NC_001978.2 + 25579 0.67 0.536417
Target:  5'- -cGCCcaggGGCGUGACCU----GAGCGGCa -3'
miRNA:   3'- guCGG----CUGCACUGGAacagCUCGCUG- -5'
8134 5' -55.7 NC_001978.2 + 37850 0.68 0.483324
Target:  5'- -uGCUGG-GUGACCcauUCGAGCGGCa -3'
miRNA:   3'- guCGGCUgCACUGGaacAGCUCGCUG- -5'
8134 5' -55.7 NC_001978.2 + 41276 0.68 0.473003
Target:  5'- aCAGCuCGACGUcGACCacaucaagccgcUUGcaUUGGGCGGCg -3'
miRNA:   3'- -GUCG-GCUGCA-CUGG------------AAC--AGCUCGCUG- -5'
8134 5' -55.7 NC_001978.2 + 13156 0.68 0.473003
Target:  5'- uCAGCCugGGCGUuccGGCCUUGUgGugcuccGCGACg -3'
miRNA:   3'- -GUCGG--CUGCA---CUGGAACAgCu-----CGCUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.