miRNA display CGI


Results 1 - 16 of 16 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
8135 5' -59.1 NC_001978.2 + 22750 0.66 0.451488
Target:  5'- cGUCGCugCCGUCGUCGgGCUCGc--- -3'
miRNA:   3'- -CAGCGugGGCAGUGGCaCGGGCauca -5'
8135 5' -59.1 NC_001978.2 + 26835 0.66 0.441752
Target:  5'- uUCGCGCCuCGUCAUgGcGUCCGaAGg -3'
miRNA:   3'- cAGCGUGG-GCAGUGgCaCGGGCaUCa -5'
8135 5' -59.1 NC_001978.2 + 26073 0.66 0.422644
Target:  5'- aGUCGCGCaCCG-UACCG-GCgCCGUucaGGUg -3'
miRNA:   3'- -CAGCGUG-GGCaGUGGCaCG-GGCA---UCA- -5'
8135 5' -59.1 NC_001978.2 + 17326 0.66 0.413278
Target:  5'- cGUCGCACaCGaaGCCGUGCgCGggUAGUg -3'
miRNA:   3'- -CAGCGUGgGCagUGGCACGgGC--AUCA- -5'
8135 5' -59.1 NC_001978.2 + 24699 0.67 0.377128
Target:  5'- -aCGCACCCGcUCACgGUGCgCGc--- -3'
miRNA:   3'- caGCGUGGGC-AGUGgCACGgGCauca -5'
8135 5' -59.1 NC_001978.2 + 34735 0.67 0.377128
Target:  5'- gGUCGCACuCCGa-ACCGUGCCgGg--- -3'
miRNA:   3'- -CAGCGUG-GGCagUGGCACGGgCauca -5'
8135 5' -59.1 NC_001978.2 + 26021 0.68 0.33503
Target:  5'- cUCG-ACCCGUCcgcgACCGUGCCCa---- -3'
miRNA:   3'- cAGCgUGGGCAG----UGGCACGGGcauca -5'
8135 5' -59.1 NC_001978.2 + 33914 0.69 0.3039
Target:  5'- gGUCgGCACCCGgguaaCGCCGUcgGCCCGa--- -3'
miRNA:   3'- -CAG-CGUGGGCa----GUGGCA--CGGGCauca -5'
8135 5' -59.1 NC_001978.2 + 25966 0.69 0.289188
Target:  5'- -gCGUACgCGUCgauACCGUGCCCGg--- -3'
miRNA:   3'- caGCGUGgGCAG---UGGCACGGGCauca -5'
8135 5' -59.1 NC_001978.2 + 15811 0.69 0.268177
Target:  5'- --gGCAcCCCGUCGgccgaCGUGCCCGUuGGUg -3'
miRNA:   3'- cagCGU-GGGCAGUg----GCACGGGCA-UCA- -5'
8135 5' -59.1 NC_001978.2 + 16004 0.69 0.268177
Target:  5'- aGUCgGCGCCCGUCGC---GCCCGUGu- -3'
miRNA:   3'- -CAG-CGUGGGCAGUGgcaCGGGCAUca -5'
8135 5' -59.1 NC_001978.2 + 15006 0.7 0.254866
Target:  5'- cGUCGCGCCauaCGUUGcCCGUGCCgGUAc- -3'
miRNA:   3'- -CAGCGUGG---GCAGU-GGCACGGgCAUca -5'
8135 5' -59.1 NC_001978.2 + 33472 0.7 0.235922
Target:  5'- -cCGUACCCGccguucaguUCGCCGUGCCgGUcccGGUc -3'
miRNA:   3'- caGCGUGGGC---------AGUGGCACGGgCA---UCA- -5'
8135 5' -59.1 NC_001978.2 + 13359 0.71 0.223959
Target:  5'- cUCGUACCCGUCAUgGagcacccGCCCGgcGUa -3'
miRNA:   3'- cAGCGUGGGCAGUGgCa------CGGGCauCA- -5'
8135 5' -59.1 NC_001978.2 + 12945 0.71 0.206985
Target:  5'- cGUCGCACCCGUacucaAUCGaGCCCGa--- -3'
miRNA:   3'- -CAGCGUGGGCAg----UGGCaCGGGCauca -5'
8135 5' -59.1 NC_001978.2 + 30976 1.06 0.000507
Target:  5'- uGUCGCACCCGUCACCGUGCCCGUAGUc -3'
miRNA:   3'- -CAGCGUGGGCAGUGGCACGGGCAUCA- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.