miRNA display CGI


Results 1 - 20 of 21 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
8136 3' -54.1 NC_001978.2 + 834 0.65 0.710334
Target:  5'- -cACGGgGUCUguacgguuaccggcUCGUCggcuucaccUUCGGCGCCUa -3'
miRNA:   3'- auUGCCgCAGA--------------AGCAG---------GAGUUGCGGA- -5'
8136 3' -54.1 NC_001978.2 + 23352 0.66 0.691351
Target:  5'- aGACGuGCucUCUUCGUUCUCAACcgggguGCCg -3'
miRNA:   3'- aUUGC-CGc-AGAAGCAGGAGUUG------CGGa -5'
8136 3' -54.1 NC_001978.2 + 20412 0.66 0.680099
Target:  5'- gUGAcCGGCGUCagcucCGUCuCUC-GCGCCg -3'
miRNA:   3'- -AUU-GCCGCAGaa---GCAG-GAGuUGCGGa -5'
8136 3' -54.1 NC_001978.2 + 18952 0.66 0.668798
Target:  5'- gAGCGcGCG-CUUCGUUCUCAuaccgaACGUCc -3'
miRNA:   3'- aUUGC-CGCaGAAGCAGGAGU------UGCGGa -5'
8136 3' -54.1 NC_001978.2 + 9818 0.66 0.668798
Target:  5'- cAAC-GCGUCUUgcaUGUCCUCAGCcuggguGCCg -3'
miRNA:   3'- aUUGcCGCAGAA---GCAGGAGUUG------CGGa -5'
8136 3' -54.1 NC_001978.2 + 36826 0.66 0.661999
Target:  5'- --cCGGCGUCggcuccggaaggaCGUCCUgAACgGCCUg -3'
miRNA:   3'- auuGCCGCAGaa-----------GCAGGAgUUG-CGGA- -5'
8136 3' -54.1 NC_001978.2 + 20680 0.67 0.646097
Target:  5'- cAGCGGCagcguUCUUCGUCgUCuuGCGCUc -3'
miRNA:   3'- aUUGCCGc----AGAAGCAGgAGu-UGCGGa -5'
8136 3' -54.1 NC_001978.2 + 7333 0.67 0.646097
Target:  5'- --uCGGaCGUCUcaagaacggUCGUCUUC-ACGCCg -3'
miRNA:   3'- auuGCC-GCAGA---------AGCAGGAGuUGCGGa -5'
8136 3' -54.1 NC_001978.2 + 10086 0.67 0.646097
Target:  5'- ---gGGCGUUcagUCGaCCaUCAACGCCg -3'
miRNA:   3'- auugCCGCAGa--AGCaGG-AGUUGCGGa -5'
8136 3' -54.1 NC_001978.2 + 30492 0.67 0.63472
Target:  5'- --uCGGCGUCcgCGUUCUCA--GCCg -3'
miRNA:   3'- auuGCCGCAGaaGCAGGAGUugCGGa -5'
8136 3' -54.1 NC_001978.2 + 21047 0.67 0.63472
Target:  5'- --uUGGCGUCcuugucgcCGUCCgUCAGCGUCUc -3'
miRNA:   3'- auuGCCGCAGaa------GCAGG-AGUUGCGGA- -5'
8136 3' -54.1 NC_001978.2 + 12001 0.67 0.61197
Target:  5'- gGACGGCGUCggcuauggCGcgUCUCAGCuuGCCg -3'
miRNA:   3'- aUUGCCGCAGaa------GCa-GGAGUUG--CGGa -5'
8136 3' -54.1 NC_001978.2 + 30310 0.67 0.61197
Target:  5'- -cACGGCGUUUUCGUcggCCcCGGCGUUg -3'
miRNA:   3'- auUGCCGCAGAAGCA---GGaGUUGCGGa -5'
8136 3' -54.1 NC_001978.2 + 21593 0.68 0.578009
Target:  5'- cGACGGgG-CUUCGUCaugccgucaCAGCGCCg -3'
miRNA:   3'- aUUGCCgCaGAAGCAGga-------GUUGCGGa -5'
8136 3' -54.1 NC_001978.2 + 1594 0.69 0.522473
Target:  5'- cAAUGGUGcUCUUccCGUUCUUGGCGCCa -3'
miRNA:   3'- aUUGCCGC-AGAA--GCAGGAGUUGCGGa -5'
8136 3' -54.1 NC_001978.2 + 34571 0.7 0.469117
Target:  5'- aUAAgGGCGcUUUCGUCCUCAagcgggGCGCg- -3'
miRNA:   3'- -AUUgCCGCaGAAGCAGGAGU------UGCGga -5'
8136 3' -54.1 NC_001978.2 + 9681 0.7 0.448562
Target:  5'- cAAUGGC--CUUCGUCauCUCGGCGCCg -3'
miRNA:   3'- aUUGCCGcaGAAGCAG--GAGUUGCGGa -5'
8136 3' -54.1 NC_001978.2 + 39216 0.7 0.428514
Target:  5'- -cACGGCGUCagCGUCCau-GCGCUUa -3'
miRNA:   3'- auUGCCGCAGaaGCAGGaguUGCGGA- -5'
8136 3' -54.1 NC_001978.2 + 5205 0.73 0.292012
Target:  5'- gAACGGCGUCgUCGUCguggucggcggaacgCUgAGCGCCg -3'
miRNA:   3'- aUUGCCGCAGaAGCAG---------------GAgUUGCGGa -5'
8136 3' -54.1 NC_001978.2 + 10628 0.74 0.253384
Target:  5'- cGGCaGCGUCgUCGUUgCUCAGCGCCg -3'
miRNA:   3'- aUUGcCGCAGaAGCAG-GAGUUGCGGa -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.