miRNA display CGI


Results 1 - 20 of 43 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
8137 5' -56.5 NC_001978.2 + 38634 0.66 0.582235
Target:  5'- cGCCGACGU--GCCCGGcGCuUCGCu -3'
miRNA:   3'- aCGGUUGCGaaCGGGUCcUGcAGUGc -5'
8137 5' -56.5 NC_001978.2 + 35135 0.66 0.582235
Target:  5'- gGUCAGUGCcccGCCCAGGACGgagCAa- -3'
miRNA:   3'- aCGGUUGCGaa-CGGGUCCUGCa--GUgc -5'
8137 5' -56.5 NC_001978.2 + 21524 0.66 0.581127
Target:  5'- aGCCugcCGCUgUGCCgcauuccgucgucUGGGGCGUCGCu -3'
miRNA:   3'- aCGGuu-GCGA-ACGG-------------GUCCUGCAGUGc -5'
8137 5' -56.5 NC_001978.2 + 183 0.66 0.56787
Target:  5'- cGCCAACGCUgccgcugaguccgcUGCCCccGuCGUgUACGa -3'
miRNA:   3'- aCGGUUGCGA--------------ACGGGucCuGCA-GUGC- -5'
8137 5' -56.5 NC_001978.2 + 6002 0.66 0.564567
Target:  5'- cGCCGACGguCUUcuugucgacGCCCGGGGCGcgaagguucugacggUCACu -3'
miRNA:   3'- aCGGUUGC--GAA---------CGGGUCCUGC---------------AGUGc -5'
8137 5' -56.5 NC_001978.2 + 28425 0.66 0.560172
Target:  5'- uUGCCGAagcguUGCUUGCCauGGGCGagACGc -3'
miRNA:   3'- -ACGGUU-----GCGAACGGguCCUGCagUGC- -5'
8137 5' -56.5 NC_001978.2 + 14001 0.66 0.560172
Target:  5'- cGUUGGCGCUUGCCaauaAGGAgGuuuUCACc -3'
miRNA:   3'- aCGGUUGCGAACGGg---UCCUgC---AGUGc -5'
8137 5' -56.5 NC_001978.2 + 39658 0.66 0.538346
Target:  5'- gUGCCuuCGUgcUGCCCAGGuGCGg-ACGg -3'
miRNA:   3'- -ACGGuuGCGa-ACGGGUCC-UGCagUGC- -5'
8137 5' -56.5 NC_001978.2 + 26205 0.66 0.538346
Target:  5'- cGCCGuACGUcgacacaaggUcGCCCAGGAUG-CGCGc -3'
miRNA:   3'- aCGGU-UGCG----------AaCGGGUCCUGCaGUGC- -5'
8137 5' -56.5 NC_001978.2 + 14469 0.66 0.524316
Target:  5'- aGCCAACGgacguaaaccgUGCCCagcgcgcGGGACGUCGu- -3'
miRNA:   3'- aCGGUUGCga---------ACGGG-------UCCUGCAGUgc -5'
8137 5' -56.5 NC_001978.2 + 32435 0.67 0.517888
Target:  5'- cGCCuuacgacguucuguCGCUcGCCCAGuGGCuUCACGg -3'
miRNA:   3'- aCGGuu------------GCGAaCGGGUC-CUGcAGUGC- -5'
8137 5' -56.5 NC_001978.2 + 633 0.67 0.51682
Target:  5'- cUGCCGcuuaGCGCUUGCUgaaCGcGGCGUaCACGg -3'
miRNA:   3'- -ACGGU----UGCGAACGG---GUcCUGCA-GUGC- -5'
8137 5' -56.5 NC_001978.2 + 6815 0.67 0.515752
Target:  5'- cGCCGAC-CUUGugucgguCCCGGGGC-UCAUGg -3'
miRNA:   3'- aCGGUUGcGAAC-------GGGUCCUGcAGUGC- -5'
8137 5' -56.5 NC_001978.2 + 13231 0.67 0.506186
Target:  5'- gGCCGAC-CUUGCCgCcGGaACGcUCACGc -3'
miRNA:   3'- aCGGUUGcGAACGG-GuCC-UGC-AGUGC- -5'
8137 5' -56.5 NC_001978.2 + 26041 0.67 0.495646
Target:  5'- aGUCGGCuggggaaCUUGCCCGGGucGCGcUCACGc -3'
miRNA:   3'- aCGGUUGc------GAACGGGUCC--UGC-AGUGC- -5'
8137 5' -56.5 NC_001978.2 + 35913 0.67 0.492504
Target:  5'- aUGCCGACGUcgggcaagggaaggUcggcGCCCAGGuCGUCAa- -3'
miRNA:   3'- -ACGGUUGCG--------------Aa---CGGGUCCuGCAGUgc -5'
8137 5' -56.5 NC_001978.2 + 38270 0.67 0.474874
Target:  5'- -cUCAGCGgaUGcCCCGGGGCuUCACGu -3'
miRNA:   3'- acGGUUGCgaAC-GGGUCCUGcAGUGC- -5'
8137 5' -56.5 NC_001978.2 + 16924 0.68 0.444562
Target:  5'- -aCCAuGCGCgcGCCCAGGGCGaauccgUCAUGa -3'
miRNA:   3'- acGGU-UGCGaaCGGGUCCUGC------AGUGC- -5'
8137 5' -56.5 NC_001978.2 + 18054 0.68 0.4347
Target:  5'- aGCgacaaGGCGCUUGCCCAuGGcCGUaACGa -3'
miRNA:   3'- aCGg----UUGCGAACGGGU-CCuGCAgUGC- -5'
8137 5' -56.5 NC_001978.2 + 36530 0.68 0.424967
Target:  5'- gGCC-ACGC--GCCCAGcuuCGUCACGc -3'
miRNA:   3'- aCGGuUGCGaaCGGGUCcu-GCAGUGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.