miRNA display CGI


Results 1 - 14 of 14 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
8138 3' -54.6 NC_001978.2 + 38920 0.66 0.648039
Target:  5'- cGCUUACGGcuUCGAGCUUGUu-UCGGa -3'
miRNA:   3'- aCGGGUGUU--AGCUCGAACAcuGGCCa -5'
8138 3' -54.6 NC_001978.2 + 15353 0.66 0.648039
Target:  5'- cUGCCC-CGucucAUCGAGCgUGcagacGACCGGa -3'
miRNA:   3'- -ACGGGuGU----UAGCUCGaACa----CUGGCCa -5'
8138 3' -54.6 NC_001978.2 + 1930 0.67 0.613936
Target:  5'- uUGCCgCACugugCGAGCaagGUGAgCGGg -3'
miRNA:   3'- -ACGG-GUGuua-GCUCGaa-CACUgGCCa -5'
8138 3' -54.6 NC_001978.2 + 4662 0.67 0.591267
Target:  5'- cUGCCCACcGUCGAGCacGcGGaaGGUg -3'
miRNA:   3'- -ACGGGUGuUAGCUCGaaCaCUggCCA- -5'
8138 3' -54.6 NC_001978.2 + 37494 0.67 0.568745
Target:  5'- gGCCCguuGCGcaUGaAGCUUGUGACCGa- -3'
miRNA:   3'- aCGGG---UGUuaGC-UCGAACACUGGCca -5'
8138 3' -54.6 NC_001978.2 + 39360 0.67 0.568745
Target:  5'- cGCuCCGgcCGGUCGAGCUUGauugcgGACCGa- -3'
miRNA:   3'- aCG-GGU--GUUAGCUCGAACa-----CUGGCca -5'
8138 3' -54.6 NC_001978.2 + 7916 0.68 0.528803
Target:  5'- cGCCCGCAaucaagcucacguacGUCGAGCccGgaacGCCGGUc -3'
miRNA:   3'- aCGGGUGU---------------UAGCUCGaaCac--UGGCCA- -5'
8138 3' -54.6 NC_001978.2 + 39431 0.68 0.524426
Target:  5'- gGUCCGCAAUCaAGCUc--GACCGGc -3'
miRNA:   3'- aCGGGUGUUAGcUCGAacaCUGGCCa -5'
8138 3' -54.6 NC_001978.2 + 35623 0.68 0.520063
Target:  5'- gUGCCCACAAUCGccccaguGGCUUGUacagcgcccagcucGACCc-- -3'
miRNA:   3'- -ACGGGUGUUAGC-------UCGAACA--------------CUGGcca -5'
8138 3' -54.6 NC_001978.2 + 31306 0.69 0.481486
Target:  5'- cGCCgACGcgCuGAGUggugacggUGUGGCCGGUc -3'
miRNA:   3'- aCGGgUGUuaG-CUCGa-------ACACUGGCCA- -5'
8138 3' -54.6 NC_001978.2 + 22367 0.69 0.481486
Target:  5'- cGCCCAUGAUCaggugaGGCUUcccgGACCGGUc -3'
miRNA:   3'- aCGGGUGUUAGc-----UCGAAca--CUGGCCA- -5'
8138 3' -54.6 NC_001978.2 + 38378 0.7 0.430349
Target:  5'- cGCCgACAugacacaaGGGgUUGUGACCGGg -3'
miRNA:   3'- aCGGgUGUuag-----CUCgAACACUGGCCa -5'
8138 3' -54.6 NC_001978.2 + 20894 0.7 0.417581
Target:  5'- aUGCUCGCGucguccuucaguccGUCGAGCUUGUcACCGa- -3'
miRNA:   3'- -ACGGGUGU--------------UAGCUCGAACAcUGGCca -5'
8138 3' -54.6 NC_001978.2 + 33359 1.07 0.001059
Target:  5'- cUGCCCACAAUCGAGCUUGUGACCGGUc -3'
miRNA:   3'- -ACGGGUGUUAGCUCGAACACUGGCCA- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.