miRNA display CGI


Results 1 - 17 of 17 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
8138 5' -52.2 NC_001978.2 + 5751 0.66 0.798237
Target:  5'- --cCUUCGUGCGGCUCAgaUGCgGa- -3'
miRNA:   3'- cguGAGGCAUGUCGAGUgaACGgUag -5'
8138 5' -52.2 NC_001978.2 + 21593 0.66 0.766907
Target:  5'- gGCGCUCaggcgucgCGUACAGCcucagcgCACggggUGCaCGUCg -3'
miRNA:   3'- -CGUGAG--------GCAUGUCGa------GUGa---ACG-GUAG- -5'
8138 5' -52.2 NC_001978.2 + 22479 0.66 0.756138
Target:  5'- -aACUCCGgcauCGGUUCccGgUUGCCGUCc -3'
miRNA:   3'- cgUGAGGCau--GUCGAG--UgAACGGUAG- -5'
8138 5' -52.2 NC_001978.2 + 14757 0.67 0.74523
Target:  5'- cGCAUUCC-UACGGCUagCACcgGCgGUCa -3'
miRNA:   3'- -CGUGAGGcAUGUCGA--GUGaaCGgUAG- -5'
8138 5' -52.2 NC_001978.2 + 33471 0.67 0.734194
Target:  5'- cGUACccgCCGUuCAGUUCGCcgUGCCGg- -3'
miRNA:   3'- -CGUGa--GGCAuGUCGAGUGa-ACGGUag -5'
8138 5' -52.2 NC_001978.2 + 21285 0.67 0.718556
Target:  5'- aGCGCgaaugaugCUGUACAGCUCcgccuucgccuuccGCUUcucguucGCCGUCu -3'
miRNA:   3'- -CGUGa-------GGCAUGUCGAG--------------UGAA-------CGGUAG- -5'
8138 5' -52.2 NC_001978.2 + 24307 0.68 0.689049
Target:  5'- uGCGCUUCGUGcCGGg--GCUUGUCGUCg -3'
miRNA:   3'- -CGUGAGGCAU-GUCgagUGAACGGUAG- -5'
8138 5' -52.2 NC_001978.2 + 8228 0.68 0.677578
Target:  5'- -gGCUCa--GCGGCUCGCgUGCCGUa -3'
miRNA:   3'- cgUGAGgcaUGUCGAGUGaACGGUAg -5'
8138 5' -52.2 NC_001978.2 + 8025 0.68 0.677578
Target:  5'- cGCGCUCCGcugugccauUACGGCUCGaccgGCguUCc -3'
miRNA:   3'- -CGUGAGGC---------AUGUCGAGUgaa-CGguAG- -5'
8138 5' -52.2 NC_001978.2 + 20389 0.68 0.66606
Target:  5'- uCGCgCCGUGCgGGCUUcCUUGaCCGUCg -3'
miRNA:   3'- cGUGaGGCAUG-UCGAGuGAAC-GGUAG- -5'
8138 5' -52.2 NC_001978.2 + 17906 0.68 0.64293
Target:  5'- gGCACgCCGU-CAGCgUC-CUUGCCGg- -3'
miRNA:   3'- -CGUGaGGCAuGUCG-AGuGAACGGUag -5'
8138 5' -52.2 NC_001978.2 + 14004 0.68 0.64293
Target:  5'- aGCGCUCCGUAa---UCACgaaGUCGUCa -3'
miRNA:   3'- -CGUGAGGCAUgucgAGUGaa-CGGUAG- -5'
8138 5' -52.2 NC_001978.2 + 21482 0.69 0.585111
Target:  5'- aGUcCUUCaGUACGGCgugCGuCUUGCCGUCg -3'
miRNA:   3'- -CGuGAGG-CAUGUCGa--GU-GAACGGUAG- -5'
8138 5' -52.2 NC_001978.2 + 17691 0.71 0.506212
Target:  5'- -gGCUCCGgACGGCUCagcggGCUUGUCAg- -3'
miRNA:   3'- cgUGAGGCaUGUCGAG-----UGAACGGUag -5'
8138 5' -52.2 NC_001978.2 + 30697 0.71 0.495287
Target:  5'- aGCGC-CgGUACGuGCUCGacgccCUUGCCGUCc -3'
miRNA:   3'- -CGUGaGgCAUGU-CGAGU-----GAACGGUAG- -5'
8138 5' -52.2 NC_001978.2 + 37256 0.71 0.473769
Target:  5'- gGCGCUCCGUcaGguGCUCGCgaaGCUAg- -3'
miRNA:   3'- -CGUGAGGCA--UguCGAGUGaa-CGGUag -5'
8138 5' -52.2 NC_001978.2 + 33324 1.13 0.00069
Target:  5'- uGCACUCCGUACAGCUCACUUGCCAUCa -3'
miRNA:   3'- -CGUGAGGCAUGUCGAGUGAACGGUAG- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.