miRNA display CGI


Results 1 - 20 of 48 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
8139 3' -51 NC_001978.2 + 19854 0.66 0.898637
Target:  5'- gGGCGACGUgCGCaUUGGCGccguGC-CGGGg -3'
miRNA:   3'- -UCGCUGCA-GUGcAGCUGUu---UGaGUCC- -5'
8139 3' -51 NC_001978.2 + 655 0.66 0.898637
Target:  5'- cGCGGCGUaCACGgcgCGGguGGcCUCAGc -3'
miRNA:   3'- uCGCUGCA-GUGCa--GCUguUU-GAGUCc -5'
8139 3' -51 NC_001978.2 + 36129 0.66 0.898637
Target:  5'- gAGUGGCccguguagCACGUCGGCGAguagggcacGCcCAGGg -3'
miRNA:   3'- -UCGCUGca------GUGCAGCUGUU---------UGaGUCC- -5'
8139 3' -51 NC_001978.2 + 12847 0.66 0.886764
Target:  5'- gGGUGGCGUCggccguaucgcgcuuAUGUCGuCGGGCUCGa- -3'
miRNA:   3'- -UCGCUGCAG---------------UGCAGCuGUUUGAGUcc -5'
8139 3' -51 NC_001978.2 + 20471 0.66 0.883683
Target:  5'- cGGCGACGUCggccgaccgGCG-CGACucGACUUcGGc -3'
miRNA:   3'- -UCGCUGCAG---------UGCaGCUGu-UUGAGuCC- -5'
8139 3' -51 NC_001978.2 + 26466 0.66 0.882905
Target:  5'- cGGCGugGUCGaccuuCGUacgGGCAAGCUCcgcgcgcacgacaAGGg -3'
miRNA:   3'- -UCGCugCAGU-----GCAg--CUGUUUGAG-------------UCC- -5'
8139 3' -51 NC_001978.2 + 33117 0.66 0.875787
Target:  5'- cGUGGCGUgACGUCcugGGCAAGCguuGGc -3'
miRNA:   3'- uCGCUGCAgUGCAG---CUGUUUGaguCC- -5'
8139 3' -51 NC_001978.2 + 21929 0.66 0.875787
Target:  5'- -cCGACGUCACGcccgggUgGACGAuuucacgguuCUCAGGg -3'
miRNA:   3'- ucGCUGCAGUGC------AgCUGUUu---------GAGUCC- -5'
8139 3' -51 NC_001978.2 + 33904 0.67 0.859193
Target:  5'- cGGCGACGU---GUUGGCGGAgcaUCGGGg -3'
miRNA:   3'- -UCGCUGCAgugCAGCUGUUUg--AGUCC- -5'
8139 3' -51 NC_001978.2 + 23643 0.67 0.859193
Target:  5'- aAGaCGACGUugagCGCGUCGGCAAggguggcgcuguGCUCGc- -3'
miRNA:   3'- -UC-GCUGCA----GUGCAGCUGUU------------UGAGUcc -5'
8139 3' -51 NC_001978.2 + 31857 0.67 0.859193
Target:  5'- aAGCcguuGAgGUCGCGUCGuACGGAUUCGa- -3'
miRNA:   3'- -UCG----CUgCAGUGCAGC-UGUUUGAGUcc -5'
8139 3' -51 NC_001978.2 + 4545 0.67 0.856614
Target:  5'- cGCGACGUCgcugagcuacugaaGCGgggCGACc--UUCAGGg -3'
miRNA:   3'- uCGCUGCAG--------------UGCa--GCUGuuuGAGUCC- -5'
8139 3' -51 NC_001978.2 + 17307 0.67 0.851389
Target:  5'- aAGgGGCG-UugGUCGGCGuauccggcggucggcGCUCAGGu -3'
miRNA:   3'- -UCgCUGCaGugCAGCUGUu--------------UGAGUCC- -5'
8139 3' -51 NC_001978.2 + 2228 0.67 0.845181
Target:  5'- uGCGGCaacCAUGUCGACGcaccgcgcacgaacuGACUCAGc -3'
miRNA:   3'- uCGCUGca-GUGCAGCUGU---------------UUGAGUCc -5'
8139 3' -51 NC_001978.2 + 18921 0.67 0.832415
Target:  5'- cGUGACG--ACGaCgGGCAGGCUCAGGc -3'
miRNA:   3'- uCGCUGCagUGCaG-CUGUUUGAGUCC- -5'
8139 3' -51 NC_001978.2 + 7499 0.67 0.826807
Target:  5'- cGUGGCGUCACGgaagucgaaggugaCGGCAAGCUucaCAGc -3'
miRNA:   3'- uCGCUGCAGUGCa-------------GCUGUUUGA---GUCc -5'
8139 3' -51 NC_001978.2 + 21944 0.67 0.823023
Target:  5'- cAGCGACGcUUGCGUCGACucaaucGACUUc-- -3'
miRNA:   3'- -UCGCUGC-AGUGCAGCUGu-----UUGAGucc -5'
8139 3' -51 NC_001978.2 + 15574 0.68 0.813416
Target:  5'- cGgGACGgcaacgUACGUCGGCGuAgUCGGGc -3'
miRNA:   3'- uCgCUGCa-----GUGCAGCUGUuUgAGUCC- -5'
8139 3' -51 NC_001978.2 + 11819 0.68 0.813416
Target:  5'- uGGCGAagaacgcgccCGUCACGUCaucaACAAGCcaCGGGg -3'
miRNA:   3'- -UCGCU----------GCAGUGCAGc---UGUUUGa-GUCC- -5'
8139 3' -51 NC_001978.2 + 1006 0.68 0.812444
Target:  5'- cGCGACGaagcCGCcggaGUCGACAAGCcgguugagggccuUCGGGa -3'
miRNA:   3'- uCGCUGCa---GUG----CAGCUGUUUG-------------AGUCC- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.