miRNA display CGI


Results 21 - 40 of 48 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
8139 3' -51 NC_001978.2 + 1759 0.68 0.803605
Target:  5'- cGCGcugaACGUCGCacacggCGGCAAGCUuCGGGc -3'
miRNA:   3'- uCGC----UGCAGUGca----GCUGUUUGA-GUCC- -5'
8139 3' -51 NC_001978.2 + 22797 0.68 0.793601
Target:  5'- cAGCGACGaaCACGacgcCGACGAAUgcCAGGa -3'
miRNA:   3'- -UCGCUGCa-GUGCa---GCUGUUUGa-GUCC- -5'
8139 3' -51 NC_001978.2 + 9271 0.68 0.793601
Target:  5'- cGCGACGgucCugGgCGACGAAgUUGGGc -3'
miRNA:   3'- uCGCUGCa--GugCaGCUGUUUgAGUCC- -5'
8139 3' -51 NC_001978.2 + 25970 0.68 0.777223
Target:  5'- cAGCG-CGUaCGCGUCGAUAccguGcccggcaagcccuucGCUCAGGc -3'
miRNA:   3'- -UCGCuGCA-GUGCAGCUGU----U---------------UGAGUCC- -5'
8139 3' -51 NC_001978.2 + 25566 0.68 0.773062
Target:  5'- gGGCGaACG--ACGUCGACAcgAAgUCGGGc -3'
miRNA:   3'- -UCGC-UGCagUGCAGCUGU--UUgAGUCC- -5'
8139 3' -51 NC_001978.2 + 7575 0.69 0.762552
Target:  5'- cGCGACGUCGCuugagcugacCGGCGAACUgGGc -3'
miRNA:   3'- uCGCUGCAGUGca--------GCUGUUUGAgUCc -5'
8139 3' -51 NC_001978.2 + 27509 0.69 0.751898
Target:  5'- uAGCGGCGgcaggCGCGUCaGCGAACUUc-- -3'
miRNA:   3'- -UCGCUGCa----GUGCAGcUGUUUGAGucc -5'
8139 3' -51 NC_001978.2 + 39841 0.69 0.741113
Target:  5'- cGCGGCaggCGCGUaCGACGGACccguuggCAGGa -3'
miRNA:   3'- uCGCUGca-GUGCA-GCUGUUUGa------GUCC- -5'
8139 3' -51 NC_001978.2 + 33826 0.69 0.719203
Target:  5'- cGUGACGUCGC-UCGACug--UCGGGc -3'
miRNA:   3'- uCGCUGCAGUGcAGCUGuuugAGUCC- -5'
8139 3' -51 NC_001978.2 + 17588 0.7 0.67437
Target:  5'- cGGCGACGUUggcgACGUUGGC-GGCUCGa- -3'
miRNA:   3'- -UCGCUGCAG----UGCAGCUGuUUGAGUcc -5'
8139 3' -51 NC_001978.2 + 28039 0.7 0.67437
Target:  5'- uGCGuucuACGUCGaccCGUCGGCGccggacACUCAGGg -3'
miRNA:   3'- uCGC----UGCAGU---GCAGCUGUu-----UGAGUCC- -5'
8139 3' -51 NC_001978.2 + 21470 0.71 0.640251
Target:  5'- cGGCGuGCGUCuugcCGUCGGCGAACagAGa -3'
miRNA:   3'- -UCGC-UGCAGu---GCAGCUGUUUGagUCc -5'
8139 3' -51 NC_001978.2 + 21568 0.71 0.628847
Target:  5'- cAGCGcACGgggugCACGUCGGCGGAgUCGa- -3'
miRNA:   3'- -UCGC-UGCa----GUGCAGCUGUUUgAGUcc -5'
8139 3' -51 NC_001978.2 + 8209 0.71 0.628847
Target:  5'- gGGCGcCGUCAUcaaGGCAGGCUCAGcGg -3'
miRNA:   3'- -UCGCuGCAGUGcagCUGUUUGAGUC-C- -5'
8139 3' -51 NC_001978.2 + 15537 0.71 0.617446
Target:  5'- gGGCGACGUCGgcaagGUCGACGGAguugUUCAGc -3'
miRNA:   3'- -UCGCUGCAGUg----CAGCUGUUU----GAGUCc -5'
8139 3' -51 NC_001978.2 + 11578 0.72 0.538577
Target:  5'- aGGCGACGUCGCGUa---AAGCUCGa- -3'
miRNA:   3'- -UCGCUGCAGUGCAgcugUUUGAGUcc -5'
8139 3' -51 NC_001978.2 + 32947 0.73 0.516614
Target:  5'- cGGCGugGUCgACGUagcgcugaGACAcaacgcugaAGCUCAGGu -3'
miRNA:   3'- -UCGCugCAG-UGCAg-------CUGU---------UUGAGUCC- -5'
8139 3' -51 NC_001978.2 + 38575 0.73 0.516614
Target:  5'- aAGCGcCGggCACGUCGGCG--UUCGGGa -3'
miRNA:   3'- -UCGCuGCa-GUGCAGCUGUuuGAGUCC- -5'
8139 3' -51 NC_001978.2 + 36789 0.73 0.505768
Target:  5'- gGGCGcCGUCucCGgcuccgUGACGGGCUCAGGc -3'
miRNA:   3'- -UCGCuGCAGu-GCa-----GCUGUUUGAGUCC- -5'
8139 3' -51 NC_001978.2 + 4597 0.73 0.49502
Target:  5'- cAGCGACGUCGCGaccaaCGGucGugUCGGGa -3'
miRNA:   3'- -UCGCUGCAGUGCa----GCUguUugAGUCC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.