miRNA display CGI


Results 1 - 20 of 54 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
8139 5' -59.7 NC_001978.2 + 26662 0.65 0.421569
Target:  5'- aCGUCUgAGCAgUGUUUCGCGGugcuguggggcaagGGCGCCa -3'
miRNA:   3'- -GCGGG-UCGU-GCGAAGCGCC--------------UUGCGGa -5'
8139 5' -59.7 NC_001978.2 + 7928 0.66 0.415014
Target:  5'- aGCUCAcGUACGUcgagCcCGGAACGCCg -3'
miRNA:   3'- gCGGGU-CGUGCGaa--GcGCCUUGCGGa -5'
8139 5' -59.7 NC_001978.2 + 16674 0.66 0.414083
Target:  5'- --aCCGGCGCGCUUgccgcuaUGCGGucaacgcaugucGGCGCCg -3'
miRNA:   3'- gcgGGUCGUGCGAA-------GCGCC------------UUGCGGa -5'
8139 5' -59.7 NC_001978.2 + 31134 0.66 0.414083
Target:  5'- uCGCUCAGCggcaGCgGCUUCgagcacaGCGGcaAGCGCCUc -3'
miRNA:   3'- -GCGGGUCG----UG-CGAAG-------CGCC--UUGCGGA- -5'
8139 5' -59.7 NC_001978.2 + 15683 0.66 0.405759
Target:  5'- cCGUCgAGC-CGUUgaaCGCGuGAGCGCCc -3'
miRNA:   3'- -GCGGgUCGuGCGAa--GCGC-CUUGCGGa -5'
8139 5' -59.7 NC_001978.2 + 28493 0.66 0.405759
Target:  5'- uCGCCCauggcaAGCaACGCUUCGgCaaccuGGGCGCCg -3'
miRNA:   3'- -GCGGG------UCG-UGCGAAGC-Gc----CUUGCGGa -5'
8139 5' -59.7 NC_001978.2 + 20924 0.66 0.393924
Target:  5'- uGCCCGGUACGac-CGCcGGGugaaggcgauugagGCGCCa -3'
miRNA:   3'- gCGGGUCGUGCgaaGCG-CCU--------------UGCGGa -5'
8139 5' -59.7 NC_001978.2 + 6748 0.66 0.387644
Target:  5'- aGCCggucacguUGGUugGCUUCGCgccGGAGCGCa- -3'
miRNA:   3'- gCGG--------GUCGugCGAAGCG---CCUUGCGga -5'
8139 5' -59.7 NC_001978.2 + 12475 0.66 0.386753
Target:  5'- aCGUCCGGCACacggucaGCgugaaCGUGGucGACGCCUu -3'
miRNA:   3'- -GCGGGUCGUG-------CGaa---GCGCC--UUGCGGA- -5'
8139 5' -59.7 NC_001978.2 + 40126 0.66 0.386753
Target:  5'- aCGCCCaucgagaAGCGCGCUUcgaucaCGUGGGcgaagcCGCCg -3'
miRNA:   3'- -GCGGG-------UCGUGCGAA------GCGCCUu-----GCGGa -5'
8139 5' -59.7 NC_001978.2 + 38694 0.66 0.378789
Target:  5'- cCGCCCGGCGCGgcaUUCGUucaGGAUGCg- -3'
miRNA:   3'- -GCGGGUCGUGCg--AAGCGc--CUUGCGga -5'
8139 5' -59.7 NC_001978.2 + 32359 0.66 0.378789
Target:  5'- gGCUCAGUAgGCacggCGCGuGAACGUCc -3'
miRNA:   3'- gCGGGUCGUgCGaa--GCGC-CUUGCGGa -5'
8139 5' -59.7 NC_001978.2 + 3090 0.66 0.378789
Target:  5'- cCGCUgAGCACGUacagcaaGCGGGGCGgCUc -3'
miRNA:   3'- -GCGGgUCGUGCGaag----CGCCUUGCgGA- -5'
8139 5' -59.7 NC_001978.2 + 36665 0.67 0.37007
Target:  5'- aGCCCugAGCGCcccugaGCcggUCGCGGAACcugaGCCg -3'
miRNA:   3'- gCGGG--UCGUG------CGa--AGCGCCUUG----CGGa -5'
8139 5' -59.7 NC_001978.2 + 2449 0.67 0.37007
Target:  5'- gCGCCguGUguaGCuCUUCGCGGAcgucCGCCa -3'
miRNA:   3'- -GCGGguCG---UGcGAAGCGCCUu---GCGGa -5'
8139 5' -59.7 NC_001978.2 + 37459 0.67 0.37007
Target:  5'- uGCCuCAGCgGCGCUaUCGaUGGucgGCGCCg -3'
miRNA:   3'- gCGG-GUCG-UGCGA-AGC-GCCu--UGCGGa -5'
8139 5' -59.7 NC_001978.2 + 17331 0.67 0.37007
Target:  5'- aCGCCCGucGCACacgaaGCcgugCGCGGGuaguGCGCCg -3'
miRNA:   3'- -GCGGGU--CGUG-----CGaa--GCGCCU----UGCGGa -5'
8139 5' -59.7 NC_001978.2 + 7787 0.67 0.361489
Target:  5'- uGCCCGGCu--CUUCGCuGAGCGUUg -3'
miRNA:   3'- gCGGGUCGugcGAAGCGcCUUGCGGa -5'
8139 5' -59.7 NC_001978.2 + 23139 0.67 0.361489
Target:  5'- gGCCCAGaucgaACGCUUCGCcauGAGUGCUc -3'
miRNA:   3'- gCGGGUCg----UGCGAAGCGc--CUUGCGGa -5'
8139 5' -59.7 NC_001978.2 + 7703 0.67 0.353047
Target:  5'- aGUUCAGCGcCGCUUCGCuGGGACuGUa- -3'
miRNA:   3'- gCGGGUCGU-GCGAAGCG-CCUUG-CGga -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.