miRNA display CGI


Results 1 - 12 of 12 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
8140 5' -55.7 NC_001978.2 + 13196 0.66 0.61327
Target:  5'- ---aGCGUGUCGggGUcgGCAGCGUcgagcGGCa -3'
miRNA:   3'- caagCGCGCAGCa-CA--UGUCGCA-----CCGa -5'
8140 5' -55.7 NC_001978.2 + 16230 0.67 0.546596
Target:  5'- ---aGCcCGUCG-GUGCccAGCGUGGCa -3'
miRNA:   3'- caagCGcGCAGCaCAUG--UCGCACCGa -5'
8140 5' -55.7 NC_001978.2 + 28273 0.67 0.535681
Target:  5'- ---gGCGCG-CGUGUuCGGCGUcaaGGCa -3'
miRNA:   3'- caagCGCGCaGCACAuGUCGCA---CCGa -5'
8140 5' -55.7 NC_001978.2 + 31301 0.67 0.524842
Target:  5'- --aCGCGCugaGUgGUG-ACGGUGUGGCc -3'
miRNA:   3'- caaGCGCG---CAgCACaUGUCGCACCGa -5'
8140 5' -55.7 NC_001978.2 + 15773 0.68 0.49286
Target:  5'- --aCG-GCGuUCGUGgcGCAGCGUGGUa -3'
miRNA:   3'- caaGCgCGC-AGCACa-UGUCGCACCGa -5'
8140 5' -55.7 NC_001978.2 + 36546 0.68 0.490759
Target:  5'- ---aGCGUGUCGgcucaugacuggGU-CGGCGUGGCa -3'
miRNA:   3'- caagCGCGCAGCa-----------CAuGUCGCACCGa -5'
8140 5' -55.7 NC_001978.2 + 17479 0.68 0.482397
Target:  5'- --gUGCGCGUCGggauucguaccUGUACGGCuacGGCUa -3'
miRNA:   3'- caaGCGCGCAGC-----------ACAUGUCGca-CCGA- -5'
8140 5' -55.7 NC_001978.2 + 6786 0.7 0.393647
Target:  5'- -aUUGCccgGCGUCGUGacaACGGCGUGcGCUu -3'
miRNA:   3'- caAGCG---CGCAGCACa--UGUCGCAC-CGA- -5'
8140 5' -55.7 NC_001978.2 + 24994 0.71 0.307547
Target:  5'- cUUCGCGCacgccggaagcauGUUGUGcGCAGCGUcGGCg -3'
miRNA:   3'- cAAGCGCG-------------CAGCACaUGUCGCA-CCGa -5'
8140 5' -55.7 NC_001978.2 + 4489 0.71 0.300613
Target:  5'- --aCGCGUGUCGUgGUugAaCGUGGCg -3'
miRNA:   3'- caaGCGCGCAGCA-CAugUcGCACCGa -5'
8140 5' -55.7 NC_001978.2 + 16544 0.73 0.257468
Target:  5'- cUUCGCGCGUgGuUGggGCGGCGUuucGGCUg -3'
miRNA:   3'- cAAGCGCGCAgC-ACa-UGUCGCA---CCGA- -5'
8140 5' -55.7 NC_001978.2 + 34346 1.07 0.000899
Target:  5'- gGUUCGCGCGUCGUGUACAGCGUGGCUc -3'
miRNA:   3'- -CAAGCGCGCAGCACAUGUCGCACCGA- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.