miRNA display CGI


Results 1 - 12 of 12 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
8141 3' -56 NC_001978.2 + 28171 0.66 0.616451
Target:  5'- cGgGCUCGAcgUGAUcuauacggcgcgCCUGAACCCGUg-- -3'
miRNA:   3'- -CgCGGGCU--ACUA------------GGACUUGGGCAgca -5'
8141 3' -56 NC_001978.2 + 33796 0.66 0.616451
Target:  5'- gGCGCUCGAcgucGAaCCUGAGuuUGUCGa -3'
miRNA:   3'- -CGCGGGCUa---CUaGGACUUggGCAGCa -5'
8141 3' -56 NC_001978.2 + 30599 0.67 0.572363
Target:  5'- cGUGCUCGAUGcgCUUGAGCuuGcCa- -3'
miRNA:   3'- -CGCGGGCUACuaGGACUUGggCaGca -5'
8141 3' -56 NC_001978.2 + 28298 0.67 0.561444
Target:  5'- cGCGCCgGGcucgcgcuUGAUCUUGAGuaCGUCGa -3'
miRNA:   3'- -CGCGGgCU--------ACUAGGACUUggGCAGCa -5'
8141 3' -56 NC_001978.2 + 20560 0.67 0.550583
Target:  5'- uGCGUCaGAaGAUCgUGAACCCGgCGa -3'
miRNA:   3'- -CGCGGgCUaCUAGgACUUGGGCaGCa -5'
8141 3' -56 NC_001978.2 + 36704 0.68 0.50786
Target:  5'- gGUaCCgGcgGAgCCUGAGCCCGUCa- -3'
miRNA:   3'- -CGcGGgCuaCUaGGACUUGGGCAGca -5'
8141 3' -56 NC_001978.2 + 9756 0.68 0.497394
Target:  5'- cCGCCgGGuccuUGAUCUuccgGAGCCCGUCa- -3'
miRNA:   3'- cGCGGgCU----ACUAGGa---CUUGGGCAGca -5'
8141 3' -56 NC_001978.2 + 34158 0.68 0.466604
Target:  5'- cGUGCCCacGUGGgcaaCUGAGCgCCGUCGa -3'
miRNA:   3'- -CGCGGGc-UACUag--GACUUG-GGCAGCa -5'
8141 3' -56 NC_001978.2 + 14333 0.69 0.417598
Target:  5'- uGCGCCCGGUaa---UGAGCCgGUCGg -3'
miRNA:   3'- -CGCGGGCUAcuaggACUUGGgCAGCa -5'
8141 3' -56 NC_001978.2 + 38607 0.72 0.29851
Target:  5'- aUGCCCGAcGAaCCUGAAccggccCCCGUCGc -3'
miRNA:   3'- cGCGGGCUaCUaGGACUU------GGGCAGCa -5'
8141 3' -56 NC_001978.2 + 18853 0.72 0.276681
Target:  5'- aGCGCCUGAg---CCU--GCCCGUCGUc -3'
miRNA:   3'- -CGCGGGCUacuaGGAcuUGGGCAGCA- -5'
8141 3' -56 NC_001978.2 + 35259 1.1 0.000614
Target:  5'- gGCGCCCGAUGAUCCUGAACCCGUCGUa -3'
miRNA:   3'- -CGCGGGCUACUAGGACUUGGGCAGCA- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.