miRNA display CGI


Results 1 - 16 of 16 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
8141 5' -57.1 NC_001978.2 + 38537 0.66 0.506404
Target:  5'- cGACGG-GGGCcgguUCAGGuucGUCGGGCAu -3'
miRNA:   3'- aCUGCCgCUUG----AGUCUu--CGGCCCGUu -5'
8141 5' -57.1 NC_001978.2 + 28086 0.66 0.505337
Target:  5'- cGGCGGUcuuccggucgcugGGGCUCAcGAaagaaaccGGCUGGGCGGg -3'
miRNA:   3'- aCUGCCG-------------CUUGAGU-CU--------UCGGCCCGUU- -5'
8141 5' -57.1 NC_001978.2 + 25224 0.66 0.495781
Target:  5'- aGACGGaCGGgaaucACUguGc-GCCGGGCAc -3'
miRNA:   3'- aCUGCC-GCU-----UGAguCuuCGGCCCGUu -5'
8141 5' -57.1 NC_001978.2 + 34692 0.66 0.495781
Target:  5'- cGuCGGCucGAACcCGGcAAGCUGGGCGu -3'
miRNA:   3'- aCuGCCG--CUUGaGUC-UUCGGCCCGUu -5'
8141 5' -57.1 NC_001978.2 + 18284 0.67 0.45436
Target:  5'- ---gGGCGAcCaCAGcAAGCCGGGCGg -3'
miRNA:   3'- acugCCGCUuGaGUC-UUCGGCCCGUu -5'
8141 5' -57.1 NC_001978.2 + 4547 0.67 0.434364
Target:  5'- cGACGucGCuGAGCUacuGAAGCgGGGCGAc -3'
miRNA:   3'- aCUGC--CG-CUUGAgu-CUUCGgCCCGUU- -5'
8141 5' -57.1 NC_001978.2 + 30388 0.67 0.434364
Target:  5'- cGGCGG-GAugauCUguGcGAGCCGGGCGg -3'
miRNA:   3'- aCUGCCgCUu---GAguC-UUCGGCCCGUu -5'
8141 5' -57.1 NC_001978.2 + 33292 0.67 0.413928
Target:  5'- cGaACGGCGAAgUCGGcauguccugaacgGAGuuGGGCGc -3'
miRNA:   3'- aC-UGCCGCUUgAGUC-------------UUCggCCCGUu -5'
8141 5' -57.1 NC_001978.2 + 10679 0.68 0.395957
Target:  5'- uUGACGGaaucaaGAACggUCuuucGAAGCUGGGCGg -3'
miRNA:   3'- -ACUGCCg-----CUUG--AGu---CUUCGGCCCGUu -5'
8141 5' -57.1 NC_001978.2 + 23820 0.7 0.302277
Target:  5'- cGAccCGGCGucGC-CGGAAGCCuGGGCAc -3'
miRNA:   3'- aCU--GCCGCu-UGaGUCUUCGG-CCCGUu -5'
8141 5' -57.1 NC_001978.2 + 34228 0.7 0.294661
Target:  5'- cGACGGC--GCUCAGuuGCCcacguGGGCAc -3'
miRNA:   3'- aCUGCCGcuUGAGUCuuCGG-----CCCGUu -5'
8141 5' -57.1 NC_001978.2 + 32051 0.7 0.294661
Target:  5'- cGGCuucGUGAAgUCGucGGAGCCGGGCAAg -3'
miRNA:   3'- aCUGc--CGCUUgAGU--CUUCGGCCCGUU- -5'
8141 5' -57.1 NC_001978.2 + 21189 0.73 0.182208
Target:  5'- aGACGGCGAACg-AGAAGCgGaaGGCGAa -3'
miRNA:   3'- aCUGCCGCUUGagUCUUCGgC--CCGUU- -5'
8141 5' -57.1 NC_001978.2 + 40791 0.74 0.141204
Target:  5'- uUGAgGGuCGAgcGCUCuucaauaAGAAGCCGGGCGAc -3'
miRNA:   3'- -ACUgCC-GCU--UGAG-------UCUUCGGCCCGUU- -5'
8141 5' -57.1 NC_001978.2 + 24411 0.83 0.036637
Target:  5'- cGACGuGCGAGCgCuGAAGCCGGGCGAc -3'
miRNA:   3'- aCUGC-CGCUUGaGuCUUCGGCCCGUU- -5'
8141 5' -57.1 NC_001978.2 + 35223 1.05 0.000675
Target:  5'- cUGACGGCGAACUCAGAAGCCGGGCAAc -3'
miRNA:   3'- -ACUGCCGCUUGAGUCUUCGGCCCGUU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.