miRNA display CGI

Results 1 - 10 of 10 are showing below:
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ID	Location	Perfect MFE.*	RefSeq Acc.	strand	Start Position	R_P_ratio#	P value
	Predicted miRNA align pattern
8142	3'	-58.7	NC_001978.2	+	8105	0.66	0.446097
	Target:  5'- aCGGccuuguucaauUCCuuGUcGCGGAGCgCGCGCACGu -3' miRNA:   3'- -GCC-----------AGGucUAcUGCCUCG-GCGCGUGU- -5'
8142	3'	-58.7	NC_001978.2	+	28463	0.66	0.436407
	Target:  5'- uGGgcgCCGGAguUGACGGAGUCGacacccCACAu -3' miRNA:   3'- gCCa--GGUCU--ACUGCCUCGGCgc----GUGU- -5'
8142	3'	-58.7	NC_001978.2	+	39412	0.67	0.408084
	Target:  5'- cCGG-CCGGAgcgUGAUcGGGUCGCGCugAa -3' miRNA:   3'- -GCCaGGUCU---ACUGcCUCGGCGCGugU- -5'
8142	3'	-58.7	NC_001978.2	+	26081	0.67	0.393456
	Target:  5'- aCGGUCgCGGAcgggucgagccgacuUGACGGcGUCGUGCAg- -3' miRNA:   3'- -GCCAG-GUCU---------------ACUGCCuCGGCGCGUgu -5'
8142	3'	-58.7	NC_001978.2	+	35698	0.68	0.333592
	Target:  5'- aCGGagCCGGA-GACGGAcgacacggccacgcuGCCGCGC-CAu -3' miRNA:   3'- -GCCa-GGUCUaCUGCCU---------------CGGCGCGuGU- -5'
8142	3'	-58.7	NC_001978.2	+	16131	0.69	0.292159
	Target:  5'- aGGUCaccguucaCAGAguUGACGGAGCC-CGUACc -3' miRNA:   3'- gCCAG--------GUCU--ACUGCCUCGGcGCGUGu -5'
8142	3'	-58.7	NC_001978.2	+	18934	0.7	0.278569
	Target:  5'- uGGUUCGGGUGACucgacccggcacgcuGAGCCggacGCGCACAa -3' miRNA:   3'- gCCAGGUCUACUGc--------------CUCGG----CGCGUGU- -5'
8142	3'	-58.7	NC_001978.2	+	28985	0.73	0.164225
	Target:  5'- aGGUCUAcGggGGCGGAGUCGC-CACGa -3' miRNA:   3'- gCCAGGU-CuaCUGCCUCGGCGcGUGU- -5'
8142	3'	-58.7	NC_001978.2	+	17598	0.76	0.102174
	Target:  5'- aGcGUCCGGGUcggcggaGACGGAGCCGCcCGCAa -3' miRNA:   3'- gC-CAGGUCUA-------CUGCCUCGGCGcGUGU- -5'
8142	3'	-58.7	NC_001978.2	+	35350	1.08	0.000365
	Target:  5'- gCGGUCCAGAUGACGGAGCCGCGCACAa -3' miRNA:   3'- -GCCAGGUCUACUGCCUCGGCGCGUGU- -5'

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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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