miRNA display CGI


Results 1 - 20 of 23 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
8143 3' -56.7 NC_001978.2 + 10578 0.66 0.547292
Target:  5'- --uUCGUcGCCGaCCgGCUCuuGUCCCAu -3'
miRNA:   3'- guuGGCAaCGGC-GG-CGAGuuCAGGGU- -5'
8143 3' -56.7 NC_001978.2 + 17934 0.66 0.546201
Target:  5'- gAGCCGUucccgggUGCCGCaugGUUCAAGagaaCCCGa -3'
miRNA:   3'- gUUGGCA-------ACGGCGg--CGAGUUCa---GGGU- -5'
8143 3' -56.7 NC_001978.2 + 173 0.66 0.545111
Target:  5'- gGACCGggaacgccaacGCUGCCGCU-GAGUCCg- -3'
miRNA:   3'- gUUGGCaa---------CGGCGGCGAgUUCAGGgu -5'
8143 3' -56.7 NC_001978.2 + 15730 0.66 0.52562
Target:  5'- gAACUGggcguacgUGUCGCCG-UCGAGcCCCAg -3'
miRNA:   3'- gUUGGCa-------ACGGCGGCgAGUUCaGGGU- -5'
8143 3' -56.7 NC_001978.2 + 33580 0.67 0.505338
Target:  5'- uGACCGUcgggugugaccccggGCCGgaaUGCaUCGAGUCCCAc -3'
miRNA:   3'- gUUGGCAa--------------CGGCg--GCG-AGUUCAGGGU- -5'
8143 3' -56.7 NC_001978.2 + 15265 0.67 0.50428
Target:  5'- gUAACCG-UGCCcuucagCGCUCGAccGUCCCAa -3'
miRNA:   3'- -GUUGGCaACGGcg----GCGAGUU--CAGGGU- -5'
8143 3' -56.7 NC_001978.2 + 8244 0.67 0.50428
Target:  5'- -uGCCGUaUGCCGCCGCaauUCAcuucGGUUaCCGg -3'
miRNA:   3'- guUGGCA-ACGGCGGCG---AGU----UCAG-GGU- -5'
8143 3' -56.7 NC_001978.2 + 12332 0.67 0.503223
Target:  5'- aAGCCGUccgcUGCCgacgucgucaGCCGCgcaacgaUCAAGUCCUu -3'
miRNA:   3'- gUUGGCA----ACGG----------CGGCG-------AGUUCAGGGu -5'
8143 3' -56.7 NC_001978.2 + 1092 0.67 0.452704
Target:  5'- uGGCCGUUGCCgacGCCGCUUgcuGGgaagCCUu -3'
miRNA:   3'- gUUGGCAACGG---CGGCGAGu--UCa---GGGu -5'
8143 3' -56.7 NC_001978.2 + 13737 0.68 0.441744
Target:  5'- -uGCCGUUGCCGuugucggcgccgaCCGCauaggcgCGAGUCgCCAu -3'
miRNA:   3'- guUGGCAACGGC-------------GGCGa------GUUCAG-GGU- -5'
8143 3' -56.7 NC_001978.2 + 33534 0.68 0.413588
Target:  5'- aAGCgCGUUGCCGCUGCcauugCGGGUgucgCCCu -3'
miRNA:   3'- gUUG-GCAACGGCGGCGa----GUUCA----GGGu -5'
8143 3' -56.7 NC_001978.2 + 26986 0.68 0.404139
Target:  5'- cCAACCacaaGCCGaaGUUCAAGUCUCAg -3'
miRNA:   3'- -GUUGGcaa-CGGCggCGAGUUCAGGGU- -5'
8143 3' -56.7 NC_001978.2 + 23243 0.7 0.341955
Target:  5'- aCGACC-UUGCC-CCGCUCAuucGUCUCGc -3'
miRNA:   3'- -GUUGGcAACGGcGGCGAGUu--CAGGGU- -5'
8143 3' -56.7 NC_001978.2 + 15514 0.7 0.333655
Target:  5'- cCGACguaCGUUGCCGUC-C-CGGGUCCCAg -3'
miRNA:   3'- -GUUG---GCAACGGCGGcGaGUUCAGGGU- -5'
8143 3' -56.7 NC_001978.2 + 23571 0.7 0.317502
Target:  5'- aCGAcCCGgaGCUugGCCGCuUCAAGUUCCAg -3'
miRNA:   3'- -GUU-GGCaaCGG--CGGCG-AGUUCAGGGU- -5'
8143 3' -56.7 NC_001978.2 + 14514 0.7 0.317502
Target:  5'- aUAGCCGc-GCCGUC-CUCAGcGUCCCAg -3'
miRNA:   3'- -GUUGGCaaCGGCGGcGAGUU-CAGGGU- -5'
8143 3' -56.7 NC_001978.2 + 11340 0.7 0.301944
Target:  5'- uGACCGU--CCGaCCGUUCAgguAGUCCCGu -3'
miRNA:   3'- gUUGGCAacGGC-GGCGAGU---UCAGGGU- -5'
8143 3' -56.7 NC_001978.2 + 14154 0.72 0.252139
Target:  5'- uCGACCGcagcaaGCCGCCGCuUCAAGUCg-- -3'
miRNA:   3'- -GUUGGCaa----CGGCGGCG-AGUUCAGggu -5'
8143 3' -56.7 NC_001978.2 + 19332 0.72 0.226836
Target:  5'- gAACCGccUUGCCGCCGCcgaGAGUgaCCCGc -3'
miRNA:   3'- gUUGGC--AACGGCGGCGag-UUCA--GGGU- -5'
8143 3' -56.7 NC_001978.2 + 33476 0.75 0.159082
Target:  5'- gUAGCCGUacCCGCCGUUCAguucgccgugccGGUCCCGg -3'
miRNA:   3'- -GUUGGCAacGGCGGCGAGU------------UCAGGGU- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.