miRNA display CGI


Results 1 - 12 of 12 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
8143 5' -58.5 NC_001978.2 + 34716 0.66 0.473089
Target:  5'- -cCGGGUgcaacgGGgcucaGUCGGCgUCGGCUc -3'
miRNA:   3'- ccGCCCAa-----CCag---CAGCCGaAGCCGAa -5'
8143 5' -58.5 NC_001978.2 + 14777 0.66 0.453096
Target:  5'- cGGCGGucaUUGG-CGUUGGCg-CGGCa- -3'
miRNA:   3'- -CCGCCc--AACCaGCAGCCGaaGCCGaa -5'
8143 5' -58.5 NC_001978.2 + 19245 0.66 0.441323
Target:  5'- gGGCGGGaacaugaagcgGGUCacucUCGGCggCGGCa- -3'
miRNA:   3'- -CCGCCCaa---------CCAGc---AGCCGaaGCCGaa -5'
8143 5' -58.5 NC_001978.2 + 17859 0.67 0.414545
Target:  5'- cGCGGcauaGUUGGUCGugUCGGCgucggaccaaUUCGGCc- -3'
miRNA:   3'- cCGCC----CAACCAGC--AGCCG----------AAGCCGaa -5'
8143 5' -58.5 NC_001978.2 + 16549 0.67 0.386991
Target:  5'- cGCGuGGUUGGgg--CGGCguUUCGGCUg -3'
miRNA:   3'- cCGC-CCAACCagcaGCCG--AAGCCGAa -5'
8143 5' -58.5 NC_001978.2 + 17308 0.67 0.378077
Target:  5'- aGgGGcGUUGGUCGgcguaucCGGCggUCGGCg- -3'
miRNA:   3'- cCgCC-CAACCAGCa------GCCGa-AGCCGaa -5'
8143 5' -58.5 NC_001978.2 + 30024 0.68 0.369303
Target:  5'- cGGuCGGcaaGGUCGUCGGCggacugggCGGCg- -3'
miRNA:   3'- -CC-GCCcaaCCAGCAGCCGaa------GCCGaa -5'
8143 5' -58.5 NC_001978.2 + 32035 0.7 0.254844
Target:  5'- aGCGGGggcGcGUCGUCGGCUUCGu--- -3'
miRNA:   3'- cCGCCCaa-C-CAGCAGCCGAAGCcgaa -5'
8143 5' -58.5 NC_001978.2 + 38897 0.71 0.23029
Target:  5'- gGGCGGGUacGUCGgcgggaaggcgcuuaCGGCUUCGaGCUUg -3'
miRNA:   3'- -CCGCCCAacCAGCa--------------GCCGAAGC-CGAA- -5'
8143 5' -58.5 NC_001978.2 + 35825 0.71 0.223735
Target:  5'- cGGCGGGagUGGUCGagcUgGGCgaCGGCg- -3'
miRNA:   3'- -CCGCCCa-ACCAGC---AgCCGaaGCCGaa -5'
8143 5' -58.5 NC_001978.2 + 12843 0.74 0.141213
Target:  5'- cGGCGGG-UGG-CGUCGGCcguaUCGcGCUUa -3'
miRNA:   3'- -CCGCCCaACCaGCAGCCGa---AGC-CGAA- -5'
8143 5' -58.5 NC_001978.2 + 36182 1.07 0.000471
Target:  5'- cGGCGGGUUGGUCGUCGGCUUCGGCUUc -3'
miRNA:   3'- -CCGCCCAACCAGCAGCCGAAGCCGAA- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.