miRNA display CGI


Results 1 - 20 of 51 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
8144 5' -57.4 NC_001978.2 + 16031 0.66 0.556979
Target:  5'- uCCCCAGGGUCcgaAGGGugacCCGgguacGgGCUCCg -3'
miRNA:   3'- cGGGGUCCUAG---UCCUu---GGU-----UgCGGGG- -5'
8144 5' -57.4 NC_001978.2 + 20552 0.66 0.556979
Target:  5'- aGCCCCAGG--------UCGACGCCCUa -3'
miRNA:   3'- -CGGGGUCCuaguccuuGGUUGCGGGG- -5'
8144 5' -57.4 NC_001978.2 + 27930 0.66 0.546211
Target:  5'- gGCgUUguGGAUCAGGAACCGGgggcagUGCUUCa -3'
miRNA:   3'- -CG-GGguCCUAGUCCUUGGUU------GCGGGG- -5'
8144 5' -57.4 NC_001978.2 + 13538 0.66 0.545137
Target:  5'- -aCCCAGG-UCGGuAACCGggugcugaaguacACGCCCg -3'
miRNA:   3'- cgGGGUCCuAGUCcUUGGU-------------UGCGGGg -5'
8144 5' -57.4 NC_001978.2 + 598 0.66 0.539782
Target:  5'- aGCCCCAGGGUuuccccCGGGGcaucuucccuucccuGCCGcuuaGCGCUUg -3'
miRNA:   3'- -CGGGGUCCUA------GUCCU---------------UGGU----UGCGGGg -5'
8144 5' -57.4 NC_001978.2 + 39509 0.66 0.53551
Target:  5'- cCCCCGGGAa-AGcccuuGCC-GCGCCCCc -3'
miRNA:   3'- cGGGGUCCUagUCcu---UGGuUGCGGGG- -5'
8144 5' -57.4 NC_001978.2 + 36150 0.66 0.524884
Target:  5'- cGCgCCCAGGuGUCGGcGggUgaGugGCCCg -3'
miRNA:   3'- -CG-GGGUCC-UAGUC-CuuGg-UugCGGGg -5'
8144 5' -57.4 NC_001978.2 + 31124 0.66 0.524884
Target:  5'- -aCCCGGGG-C-GGAGCUGAccacgcacguucCGCCCCg -3'
miRNA:   3'- cgGGGUCCUaGuCCUUGGUU------------GCGGGG- -5'
8144 5' -57.4 NC_001978.2 + 21570 0.66 0.524884
Target:  5'- aGCCCCGucGGGUCAGcacguACCGACgggGCUUCg -3'
miRNA:   3'- -CGGGGU--CCUAGUCcu---UGGUUG---CGGGG- -5'
8144 5' -57.4 NC_001978.2 + 9087 0.66 0.514339
Target:  5'- cGCCUCAGcGAUaccGGcGCCAAUGCCg- -3'
miRNA:   3'- -CGGGGUC-CUAgu-CCuUGGUUGCGGgg -5'
8144 5' -57.4 NC_001978.2 + 22147 0.66 0.514339
Target:  5'- aCCCC-GGAUCAGGcGCuCAaacaggucguGCGCUUCg -3'
miRNA:   3'- cGGGGuCCUAGUCCuUG-GU----------UGCGGGG- -5'
8144 5' -57.4 NC_001978.2 + 35183 0.66 0.514339
Target:  5'- cGCCCCgguacgacGGGuUCAGGAucauCgGGCGCCg- -3'
miRNA:   3'- -CGGGG--------UCCuAGUCCUu---GgUUGCGGgg -5'
8144 5' -57.4 NC_001978.2 + 38210 0.66 0.503882
Target:  5'- cGCCuUCGGGAcgUCAGcGGCU--CGCCCCg -3'
miRNA:   3'- -CGG-GGUCCU--AGUCcUUGGuuGCGGGG- -5'
8144 5' -57.4 NC_001978.2 + 40445 0.66 0.503882
Target:  5'- cCCCCAGG-UCAacGGCU--CGCCCCg -3'
miRNA:   3'- cGGGGUCCuAGUccUUGGuuGCGGGG- -5'
8144 5' -57.4 NC_001978.2 + 38331 0.66 0.502841
Target:  5'- aGCCCCGGGGcauccgcUgAGGGuugccGCCGGgGCUUCg -3'
miRNA:   3'- -CGGGGUCCU-------AgUCCU-----UGGUUgCGGGG- -5'
8144 5' -57.4 NC_001978.2 + 40637 0.67 0.493517
Target:  5'- cUCCCAGGGUUgAGcGACCGGCGUugccuCCCu -3'
miRNA:   3'- cGGGGUCCUAG-UCcUUGGUUGCG-----GGG- -5'
8144 5' -57.4 NC_001978.2 + 40325 0.67 0.493517
Target:  5'- uGCCCCAGGA-----AGCCcgcuguGCGCCCg -3'
miRNA:   3'- -CGGGGUCCUaguccUUGGu-----UGCGGGg -5'
8144 5' -57.4 NC_001978.2 + 37710 0.67 0.490427
Target:  5'- cGCCCCuGGGUgAucuucgacGGAGCCAugaagggcuauugcGCGCugCCCg -3'
miRNA:   3'- -CGGGGuCCUAgU--------CCUUGGU--------------UGCG--GGG- -5'
8144 5' -57.4 NC_001978.2 + 37918 0.67 0.483251
Target:  5'- cGCCCCcgccGAcaAGGGGCaCuuCGCCCCa -3'
miRNA:   3'- -CGGGGuc--CUagUCCUUG-GuuGCGGGG- -5'
8144 5' -57.4 NC_001978.2 + 28151 0.67 0.483251
Target:  5'- aGCCCCAGcGA-CcGGAagaccGCCGuuagguCGCCCUg -3'
miRNA:   3'- -CGGGGUC-CUaGuCCU-----UGGUu-----GCGGGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.