miRNA display CGI


Results 1 - 20 of 41 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
8145 3' -55.1 NC_001978.2 + 22160 0.66 0.642511
Target:  5'- ----gGCCGACGUacucacCCCggaUCAGgCGCUCa -3'
miRNA:   3'- ugaagCGGUUGCA------GGGa--AGUC-GCGAG- -5'
8145 3' -55.1 NC_001978.2 + 13152 0.66 0.642511
Target:  5'- cGCUUCaGCCuggGCGUUCCggccuugUGGUGCUCc -3'
miRNA:   3'- -UGAAG-CGGu--UGCAGGGaa-----GUCGCGAG- -5'
8145 3' -55.1 NC_001978.2 + 22351 0.66 0.642511
Target:  5'- --aUC-CCGACGUcgCCCUUCagaugAGCGCUUa -3'
miRNA:   3'- ugaAGcGGUUGCA--GGGAAG-----UCGCGAG- -5'
8145 3' -55.1 NC_001978.2 + 16296 0.66 0.642511
Target:  5'- gGCUUCGuguugaCCGACGUCa---CGGCGUUCg -3'
miRNA:   3'- -UGAAGC------GGUUGCAGggaaGUCGCGAG- -5'
8145 3' -55.1 NC_001978.2 + 7795 0.66 0.639107
Target:  5'- cACUUCGCCGgacACaaacgcgucguacaGUCCCagcgaagCGGCGCUg -3'
miRNA:   3'- -UGAAGCGGU---UG--------------CAGGGaa-----GUCGCGAg -5'
8145 3' -55.1 NC_001978.2 + 25609 0.66 0.631165
Target:  5'- ---aCGCCGuCGaaUCCCUUCAGCGg-- -3'
miRNA:   3'- ugaaGCGGUuGC--AGGGAAGUCGCgag -5'
8145 3' -55.1 NC_001978.2 + 26951 0.66 0.631165
Target:  5'- uACguucgCGCCGACGUUCCUgaUCA-UGCUUg -3'
miRNA:   3'- -UGaa---GCGGUUGCAGGGA--AGUcGCGAG- -5'
8145 3' -55.1 NC_001978.2 + 38485 0.66 0.61982
Target:  5'- aGCguagCGCCAacgaagacaagGCGgccgaCCUUCAGCGCg- -3'
miRNA:   3'- -UGaa--GCGGU-----------UGCag---GGAAGUCGCGag -5'
8145 3' -55.1 NC_001978.2 + 22864 0.66 0.61982
Target:  5'- cGCggUCGguCUGACGUCgCUUCucGCGCUCa -3'
miRNA:   3'- -UGa-AGC--GGUUGCAGgGAAGu-CGCGAG- -5'
8145 3' -55.1 NC_001978.2 + 8875 0.66 0.606222
Target:  5'- cGCUUCGCCcccgaccGGCG-CgCUUCGugucucuGCGCUCa -3'
miRNA:   3'- -UGAAGCGG-------UUGCaGgGAAGU-------CGCGAG- -5'
8145 3' -55.1 NC_001978.2 + 4163 0.66 0.597174
Target:  5'- uCUUCGCCGACuucgCCCaggUUCAGCGg-- -3'
miRNA:   3'- uGAAGCGGUUGca--GGG---AAGUCGCgag -5'
8145 3' -55.1 NC_001978.2 + 21500 0.66 0.597174
Target:  5'- gACUcCGCCGACGUgcacCCCgu--GCGCUg -3'
miRNA:   3'- -UGAaGCGGUUGCA----GGGaaguCGCGAg -5'
8145 3' -55.1 NC_001978.2 + 23011 0.66 0.597174
Target:  5'- --gUUGCCGACGU-CCUUCAGCa--- -3'
miRNA:   3'- ugaAGCGGUUGCAgGGAAGUCGcgag -5'
8145 3' -55.1 NC_001978.2 + 19423 0.66 0.585894
Target:  5'- ---aCGUCGGCGUCCgUcgggacgUAGCGCUCc -3'
miRNA:   3'- ugaaGCGGUUGCAGGgAa------GUCGCGAG- -5'
8145 3' -55.1 NC_001978.2 + 30361 0.66 0.585894
Target:  5'- gGCUUCGUacACGUCgCCcUCGGCgGCUUc -3'
miRNA:   3'- -UGAAGCGguUGCAG-GGaAGUCG-CGAG- -5'
8145 3' -55.1 NC_001978.2 + 17505 0.66 0.585894
Target:  5'- ---aCGCCGuCG-CCC-UCAGCGCUg -3'
miRNA:   3'- ugaaGCGGUuGCaGGGaAGUCGCGAg -5'
8145 3' -55.1 NC_001978.2 + 38144 0.67 0.574655
Target:  5'- gGCgagcCGCUGACGUCCCgaaGGCGUg- -3'
miRNA:   3'- -UGaa--GCGGUUGCAGGGaagUCGCGag -5'
8145 3' -55.1 NC_001978.2 + 5980 0.67 0.574655
Target:  5'- --aUCGUUuACGaUUCCUUCAGCGCg- -3'
miRNA:   3'- ugaAGCGGuUGC-AGGGAAGUCGCGag -5'
8145 3' -55.1 NC_001978.2 + 15507 0.67 0.574655
Target:  5'- gACUaCGCCGACGuacguugccgUCCCggguccCAGCGCg- -3'
miRNA:   3'- -UGAaGCGGUUGC----------AGGGaa----GUCGCGag -5'
8145 3' -55.1 NC_001978.2 + 9244 0.67 0.563465
Target:  5'- --gUUGCCAAaGaCCCUUCAGgGCUUc -3'
miRNA:   3'- ugaAGCGGUUgCaGGGAAGUCgCGAG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.